Cadmium in PDB 9j01: Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies

The structure of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies, PDB code: 9j01 was solved by R.Goswami, S.Biswas, R.L.Barbosa, S.Sung, J.A.Marquez, S.Chakraborti, Y.Manickam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.32 / 1.61
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	31.365, 37.075, 41.014, 90, 93.19, 90
R / Rfree (%)	18.8 / 23.8

The structure of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Cadmium atom in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies (pdb code 9j01). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 5 binding sites of Cadmium where determined in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies, PDB code: 9j01:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;

Cadmium binding site 1 out of 5 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd201 b:23.0 occ:0.87 OD2 A:ASP40 2.3 19.8 1.0 CL A:CL206 2.4 22.2 0.7 O A:HOH318 2.5 22.4 0.8 CL A:CL207 2.5 23.0 0.9 CG A:ASP40 3.0 24.5 1.0 OD1 A:ASP40 3.1 25.5 1.0 N A:ASP10 3.9 21.5 1.0 O A:LYS8 4.3 26.8 1.0 O A:HOH357 4.4 36.4 1.0 CB A:ASP40 4.5 20.3 1.0 CA A:TYR9 4.7 19.3 1.0 CA A:ASP10 4.7 19.2 1.0 C A:TYR9 4.8 23.8 1.0 O A:HOH305 4.8 38.6 1.0 O A:HOH309 4.9 23.7 1.0 C A:LYS8 5.0 24.3 1.0

Cadmium binding site 2 out of 5 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:65.1 occ:0.79 O A:HOH364 2.2 51.6 0.9 O A:HOH367 2.3 56.6 0.9 OD2 A:ASP21 2.5 38.9 1.0 OD1 A:ASP21 2.6 34.4 1.0 CG A:ASP21 2.9 34.3 1.0 O A:HOH323 3.1 53.9 1.0 O A:HOH354 4.1 32.7 1.0 CB A:ASP21 4.3 28.2 1.0 O A:HOH343 4.5 36.9 0.3 NH1 A:ARG78 4.5 24.5 1.0 O A:HOH301 4.6 46.2 0.9 NH2 A:ARG78 4.9 22.4 1.0

Cadmium binding site 3 out of 5 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd203 b:35.6 occ:0.40 OD2 A:ASP13 2.4 42.1 1.0 O A:HOH348 2.5 54.6 1.0 O A:HOH366 2.8 37.0 1.0 CG A:ASP13 3.3 38.0 1.0 CB A:ASP13 3.4 30.7 1.0 O A:HOH328 4.5 35.0 0.9 OD1 A:ASP13 4.5 41.6 1.0 O A:HOH360 4.6 45.7 0.7 CA A:ASP13 4.9 26.6 1.0

Cadmium binding site 4 out of 5 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd204 b:39.2 occ:0.31 O A:HOH338 2.4 39.5 0.8 O A:GLU92 2.5 26.1 1.0 OE1 A:GLU97 2.6 44.0 1.0 OE2 A:GLU97 3.2 49.8 1.0 CD A:GLU97 3.3 45.1 1.0 C A:GLU92 3.6 30.2 1.0 CA A:GLU92 4.1 28.0 1.0 CB A:GLU92 4.2 28.6 0.9 CB A:ASN93 4.7 23.0 1.0 N A:ASN93 4.7 25.9 1.0 CG A:GLU97 4.8 39.0 1.0 CD2 A:LEU94 5.0 33.4 1.0

Cadmium binding site 5 out of 5 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd205 b:57.2 occ:0.38 O A:HOH339 2.4 47.6 0.3 OE2 A:GLU43 2.6 48.0 1.0 OE1 A:GLU43 2.6 46.4 1.0 O A:HOH361 2.7 52.9 1.0 O A:HOH339 2.7 47.2 0.7 CD A:GLU43 2.9 42.7 1.0 O A:HOH305 4.1 38.6 1.0 O A:HOH357 4.3 36.4 1.0 CG A:GLU43 4.4 31.6 1.0 NE2 A:GLN63 4.8 36.5 1.0 CG A:GLN63 4.8 32.9 1.0

R.Goswami, S.Biswas, R.L.Barbosa, S.Sung, J.A.Marquez, S.Chakraborti, Y.Manickam. Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies To Be Published.