Cadmium in PDB 1aaz: The Structure of Oxidized Bacteriophage T4 Glutaredoxin (Thioredoxin)

The structure of The Structure of Oxidized Bacteriophage T4 Glutaredoxin (Thioredoxin), PDB code: 1aaz was solved by H.Eklund, M.Ingelman, B.-O.Soderberg, T.Uhlin, P.Nordlund, M.Nikkola, U.Sonnerstam, T.Joelson, K.Petratos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.100, 45.900, 40.800, 90.00, 99.40, 90.00
R / Rfree (%)	21 / n/a

The binding sites of Cadmium atom in the The Structure of Oxidized Bacteriophage T4 Glutaredoxin (Thioredoxin) (pdb code 1aaz). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the The Structure of Oxidized Bacteriophage T4 Glutaredoxin (Thioredoxin), PDB code: 1aaz:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the The Structure of Oxidized Bacteriophage T4 Glutaredoxin (Thioredoxin)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of The Structure of Oxidized Bacteriophage T4 Glutaredoxin (Thioredoxin) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd188 b:12.9 occ:1.00 H1 B:HOH198 1.4 0.0 1.0 O B:HOH190 1.8 2.0 1.0 H2 B:HOH190 2.1 0.0 1.0 O B:HOH198 2.3 22.3 1.0 ND1 B:HIS75 2.4 8.0 1.0 H2 B:HOH198 2.6 0.0 1.0 H1 B:HOH190 2.8 0.0 1.0 CE1 B:HIS75 3.3 10.2 1.0 CG B:HIS75 3.3 8.7 1.0 CB B:HIS75 3.7 8.1 1.0 O B:HIS75 4.0 9.9 1.0 H2 B:HOH268 4.1 0.0 1.0 O B:HOH268 4.2 65.5 1.0 NE2 B:HIS75 4.4 8.0 1.0 H1 B:HOH268 4.4 0.0 1.0 CD2 B:HIS75 4.5 7.3 1.0 C B:HIS75 4.5 10.7 1.0 HE22 B:GLN81 4.8 0.0 1.0 CA B:HIS75 4.8 9.7 1.0

Cadmium binding site 2 out of 2 in the The Structure of Oxidized Bacteriophage T4 Glutaredoxin (Thioredoxin)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of The Structure of Oxidized Bacteriophage T4 Glutaredoxin (Thioredoxin) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd189 b:16.2 occ:1.00 H1 B:HOH200 1.7 0.0 1.0 H1 B:HOH199 1.7 0.0 1.0 O B:HOH201 2.2 18.3 1.0 O B:HOH200 2.4 22.1 1.0 NE2 B:HIS12 2.4 15.7 1.0 O B:HOH199 2.5 21.1 1.0 H1 B:HOH201 2.5 0.0 1.0 H2 B:HOH201 2.7 0.0 1.0 H2 B:HOH199 2.9 0.0 1.0 H2 B:HOH200 3.2 0.0 1.0 CE1 B:HIS12 3.3 15.8 1.0 CD2 B:HIS12 3.3 16.8 1.0 H1 B:HOH202 3.7 0.0 1.0 H2 B:HOH205 4.0 0.0 1.0 O B:LYS13 4.2 9.2 1.0 O B:HOH205 4.2 54.2 1.0 ND1 B:HIS12 4.4 17.4 1.0 H2 B:HOH202 4.4 0.0 1.0 CG B:HIS12 4.4 15.3 1.0 H1 B:HOH212 4.5 0.0 1.0 O B:HOH202 4.6 43.0 1.0 H1 B:HOH234 4.6 0.0 1.0

H.Eklund, M.Ingelman, B.O.Soderberg, T.Uhlin, P.Nordlund, M.Nikkola, U.Sonnerstam, T.Joelson, K.Petratos. Structure of Oxidized Bacteriophage T4 Glutaredoxin (Thioredoxin). Refinement of Native and Mutant Proteins. J.Mol.Biol. V. 228 596 1992.
ISSN: ISSN 0022-2836
PubMed: 1453466
DOI: 10.1016/0022-2836(92)90844-A