Cadmium in PDB 1aew: L-Chain Horse Apoferritin

The structure of L-Chain Horse Apoferritin, PDB code: 1aew was solved by P.D.Hempstead, S.J.Yewdall, D.M.Lawson, P.M.Harrison, P.J.Artymiuk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.95
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	184.000, 184.000, 184.000, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / n/a

The binding sites of Cadmium atom in the L-Chain Horse Apoferritin (pdb code 1aew). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 6 binding sites of Cadmium where determined in the L-Chain Horse Apoferritin, PDB code: 1aew:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6;

Cadmium binding site 1 out of 6 in the L-Chain Horse Apoferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of L-Chain Horse Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd185 b:21.4 occ:0.50 O A:HOH410 1.5 32.7 1.0 OD2 A:ASP84 2.1 23.7 1.0 OD1 A:ASP84 2.7 13.0 1.0 CG A:ASP84 2.8 12.9 1.0 CB A:ASP84 4.2 13.8 1.0 O A:HOH2544 4.7 27.0 1.0

Cadmium binding site 2 out of 6 in the L-Chain Horse Apoferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of L-Chain Horse Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd186 b:25.3 occ:0.33 OD1 A:ASP131 3.6 62.0 1.0 OG A:SER135 4.6 0.0 1.0 OE1 A:GLU134 4.8 40.7 1.0 CG A:ASP131 4.8 37.0 1.0

Cadmium binding site 3 out of 6 in the L-Chain Horse Apoferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of L-Chain Horse Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd187 b:45.9 occ:1.00 OE2 A:GLU49 2.5 41.3 1.0 OE1 A:GLU49 2.5 55.0 1.0 SG A:CYS52 2.7 22.9 1.0 OD1 A:ASP42 2.7 20.2 1.0 CD A:GLU49 2.8 0.0 1.0 CG A:ASP42 3.3 18.2 1.0 CB A:CYS52 3.5 12.9 1.0 CB A:ASP42 3.5 11.9 1.0 CA A:ASP42 4.2 9.0 1.0 O A:HOH265 4.3 16.9 1.0 OD2 A:ASP42 4.3 20.8 1.0 CG A:GLU49 4.3 0.0 1.0 CD2 A:HIS53 4.5 52.7 1.0 NE2 A:HIS53 4.8 64.6 1.0 CA A:GLU49 4.9 7.9 1.0 CA A:CYS52 5.0 11.1 1.0

Cadmium binding site 4 out of 6 in the L-Chain Horse Apoferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of L-Chain Horse Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd188 b:19.3 occ:0.33 O A:HOH358 1.7 33.5 1.0 OE1 A:GLU134 2.8 40.7 1.0 OE2 A:GLU134 3.1 26.2 1.0 CD A:GLU134 3.2 46.8 1.0 CA A:ASP131 4.2 13.8 1.0 N A:ASP131 4.2 15.7 1.0 CD A:CD189 4.3 22.3 0.3 C A:CYS130 4.4 16.6 1.0 CB A:CYS130 4.6 34.4 1.0 CB A:ASP131 4.6 20.0 1.0 O A:CYS130 4.6 21.6 1.0 CG A:GLU134 4.6 30.2 1.0 OD1 A:ASP131 4.9 62.0 1.0

Cadmium binding site 5 out of 6 in the L-Chain Horse Apoferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of L-Chain Horse Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd189 b:22.3 occ:0.33 NE2 A:HIS118 2.6 27.2 1.0 CE1 A:HIS118 2.6 20.3 1.0 OE2 A:GLU134 3.3 26.2 1.0 O A:HOH358 3.5 33.5 1.0 CB A:CYS130 3.5 34.4 1.0 OG A:SER122 3.7 42.8 1.0 SG A:CYS130 3.7 37.4 1.0 ND1 A:HIS118 3.9 24.2 1.0 CD2 A:HIS118 3.9 25.7 1.0 CD A:CD188 4.3 19.3 0.3 CG A:HIS118 4.5 21.4 1.0 CD A:GLU134 4.6 46.8 1.0 CA A:CYS130 4.8 16.6 1.0

Cadmium binding site 6 out of 6 in the L-Chain Horse Apoferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of L-Chain Horse Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd190 b:44.6 occ:0.50 NE2 A:HIS136 2.5 54.8 1.0 CE1 A:HIS136 3.4 71.9 1.0 CD2 A:HIS136 3.6 34.0 1.0 ND1 A:HIS136 4.6 50.0 1.0 O A:HOH301 4.6 31.0 1.0 CG A:HIS136 4.7 32.1 1.0 CB A:SER135 4.8 24.1 1.0

P.D.Hempstead, S.J.Yewdall, A.R.Fernie, D.M.Lawson, P.J.Artymiuk, D.W.Rice, G.C.Ford, P.M.Harrison. Comparison of the Three-Dimensional Structures of Recombinant Human H and Horse L Ferritins at High Resolution. J.Mol.Biol. V. 268 424 1997.
ISSN: ISSN 0022-2836
PubMed: 9159481
DOI: 10.1006/JMBI.1997.0970