Cadmium in PDB 1aiz: Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution

The structure of Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution, PDB code: 1aiz was solved by E.N.Baker, B.F.Anderson, K.A.Blackwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	75.150, 74.350, 99.350, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Cadmium atom in the Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution (pdb code 1aiz). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution, PDB code: 1aiz:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd130 b:24.8 occ:1.00 ND1 A:HIS117 2.2 9.5 1.0 ND1 A:HIS46 2.3 9.4 1.0 SG A:CYS112 2.3 11.8 1.0 O A:GLY45 2.8 15.3 1.0 CG A:HIS117 3.1 15.5 1.0 CG A:HIS46 3.2 10.0 1.0 CE1 A:HIS117 3.2 11.8 1.0 CE1 A:HIS46 3.2 6.4 1.0 SD A:MET121 3.3 13.4 1.0 CA A:HIS46 3.3 11.2 1.0 CB A:HIS117 3.4 11.6 1.0 CB A:CYS112 3.4 9.6 1.0 CB A:HIS46 3.5 11.7 1.0 C A:GLY45 3.7 12.4 1.0 CB A:PHE114 3.8 9.6 1.0 N A:HIS46 3.9 10.2 1.0 CE A:MET121 4.0 16.4 1.0 NE2 A:HIS117 4.2 11.9 1.0 CD2 A:HIS117 4.3 13.0 1.0 CD2 A:HIS46 4.3 14.0 1.0 NE2 A:HIS46 4.3 14.6 1.0 N A:ASN47 4.5 10.8 1.0 C A:HIS46 4.5 12.8 1.0 CG A:PHE114 4.6 10.5 1.0 CA A:CYS112 4.7 9.0 1.0 N A:PHE114 4.8 10.1 1.0 CG A:MET121 4.8 15.3 1.0 CD1 A:PHE114 4.8 15.7 1.0 CA A:PHE114 4.9 11.9 1.0 CA A:HIS117 4.9 10.6 1.0

Cadmium binding site 2 out of 2 in the Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd130 b:19.5 occ:1.00 ND1 B:HIS117 2.2 19.3 1.0 ND1 B:HIS46 2.2 10.7 1.0 SG B:CYS112 2.4 12.8 1.0 O B:GLY45 2.7 14.2 1.0 CE1 B:HIS117 3.1 16.3 1.0 CG B:HIS117 3.1 20.9 1.0 CE1 B:HIS46 3.2 10.8 1.0 SD B:MET121 3.2 14.3 1.0 CG B:HIS46 3.3 8.6 1.0 CA B:HIS46 3.3 5.7 1.0 CB B:CYS112 3.3 9.5 1.0 CB B:HIS117 3.4 14.2 1.0 CB B:HIS46 3.6 8.6 1.0 C B:GLY45 3.7 13.4 1.0 CB B:PHE114 3.9 12.9 1.0 N B:HIS46 3.9 9.6 1.0 CE B:MET121 4.0 11.7 1.0 NE2 B:HIS117 4.2 17.5 1.0 CD2 B:HIS117 4.3 23.4 1.0 NE2 B:HIS46 4.3 14.2 1.0 CD2 B:HIS46 4.3 12.6 1.0 C B:HIS46 4.5 17.1 1.0 N B:ASN47 4.6 9.8 1.0 CG B:PHE114 4.6 13.3 1.0 CA B:CYS112 4.7 8.2 1.0 CG B:MET121 4.8 16.4 1.0 N B:PHE114 4.9 14.1 1.0 CA B:HIS117 5.0 12.1 1.0 CD1 B:PHE114 5.0 13.1 1.0

W.E.Shepard, R.L.Kingston, B.F.Anderson, E.N.Baker. Structure of Apo-Azurin From Alcaligenes Denitrificans at 1.8 A Resolution. Acta Crystallogr.,Sect.D V. 49 331 1993.
ISSN: ISSN 0907-4449
PubMed: 15299522
DOI: 10.1107/S0907444992013544