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Cadmium in PDB 1auq: A1 Domain of Von Willebrand Factor

Protein crystallography data

The structure of A1 Domain of Von Willebrand Factor, PDB code: 1auq was solved by J.Emsley, M.Cruz, R.Handin, R.Liddington, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.30
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 86.395, 86.395, 68.125, 90.00, 90.00, 120.00
R / Rfree (%) 18.6 / 24.8

Cadmium Binding Sites:

The binding sites of Cadmium atom in the A1 Domain of Von Willebrand Factor (pdb code 1auq). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the A1 Domain of Von Willebrand Factor, PDB code: 1auq:

Cadmium binding site 1 out of 1 in 1auq

Go back to Cadmium Binding Sites List in 1auq
Cadmium binding site 1 out of 1 in the A1 Domain of Von Willebrand Factor


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of A1 Domain of Von Willebrand Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd400

b:63.6
occ:1.00
NE2 A:HIS559 2.6 33.8 1.0
NE2 A:HIS563 3.0 38.4 1.0
O A:HOH18 3.3 29.6 1.0
CE1 A:HIS559 3.4 34.5 1.0
CD2 A:HIS563 3.5 41.5 1.0
CD2 A:HIS559 3.7 35.3 1.0
CE1 A:HIS563 4.0 39.6 1.0
ND1 A:HIS559 4.6 35.6 1.0
N A:GLY561 4.6 34.5 1.0
CG A:HIS563 4.6 42.6 1.0
CA A:GLY561 4.7 29.4 1.0
CG A:HIS559 4.8 31.1 1.0
ND1 A:HIS563 4.8 41.4 1.0
C A:GLY561 4.9 28.6 1.0

Reference:

J.Emsley, M.Cruz, R.Handin, R.Liddington. Crystal Structure of the Von Willebrand Factor A1 Domain and Implications For the Binding of Platelet Glycoprotein Ib. J.Biol.Chem. V. 273 10396 1998.
ISSN: ISSN 0021-9258
PubMed: 9553097
DOI: 10.1074/JBC.273.17.10396
Page generated: Sat Dec 12 08:08:24 2020

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