Cadmium in PDB 1c47: Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction

All present enzymatic activity of Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction:
2.7.5.1;

The structure of Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction, PDB code: 1c47 was solved by S.Baranidharan, W.J.Ray Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	6.00 / 2.70
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	174.420, 174.420, 101.100, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 24.8

The binding sites of Cadmium atom in the Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction (pdb code 1c47). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction, PDB code: 1c47:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd562 b:3.5 occ:1.00 OG A:SER116 2.3 42.8 1.0 OD1 A:ASP287 2.3 33.2 1.0 OD2 A:ASP289 2.4 26.2 1.0 OD1 A:ASP291 2.4 18.7 1.0 O2P A:G16563 2.5 19.3 1.0 CG A:ASP291 3.0 18.0 1.0 CB A:SER116 3.2 37.5 1.0 OD2 A:ASP291 3.2 21.6 1.0 CG A:ASP289 3.3 23.3 1.0 O1P A:G16563 3.4 23.4 1.0 CG A:ASP287 3.5 29.2 1.0 OD1 A:ASP289 3.5 32.2 1.0 P A:G16563 3.5 29.5 1.0 OD2 A:ASP287 3.9 28.9 1.0 CA A:SER116 3.9 32.4 1.0 NE A:ARG292 4.3 16.3 1.0 O3P A:G16563 4.3 30.8 1.0 CB A:ASP291 4.3 9.0 1.0 CG A:ARG292 4.4 10.0 1.0 NZ A:LYS388 4.4 44.3 1.0 N A:HIS117 4.4 28.0 1.0 N A:ASP291 4.4 2.6 1.0 C A:SER116 4.5 30.0 1.0 CB A:ASP289 4.7 13.7 1.0 O6 A:G16563 4.8 28.5 1.0 CB A:ASP287 4.8 22.1 1.0 N A:ASP289 4.8 7.1 1.0 CA A:ASP291 4.8 4.8 1.0 CD A:ARG292 4.8 8.5 1.0 NZ A:LYS129 4.8 22.5 1.0 N A:ARG292 4.9 5.5 1.0

Cadmium binding site 2 out of 2 in the Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd562 b:2.0 occ:1.00 OG B:SER116 2.3 32.3 1.0 OD2 B:ASP291 2.3 35.9 1.0 OD2 B:ASP289 2.4 42.8 1.0 OD2 B:ASP287 2.8 37.6 1.0 CB B:SER116 3.1 26.6 1.0 CG B:ASP289 3.2 40.4 1.0 OD1 B:ASP289 3.2 47.7 1.0 CG B:ASP291 3.3 33.2 1.0 CA B:SER116 3.8 26.4 1.0 OD1 B:ASP291 3.9 33.4 1.0 CG B:ASP287 4.0 40.2 1.0 O B:HOH567 4.2 31.5 1.0 CB B:ASP291 4.3 23.6 1.0 NE B:ARG292 4.5 34.8 1.0 C B:SER116 4.5 26.0 1.0 NZ B:LYS388 4.6 41.8 1.0 CB B:ASP289 4.6 37.4 1.0 N B:ASP291 4.6 23.7 1.0 N B:HIS117 4.6 29.0 1.0 NH2 B:ARG292 4.8 34.0 1.0 OD1 B:ASP287 4.8 43.9 1.0 CA B:ASP291 4.8 21.1 1.0 N B:ASP289 4.9 32.7 1.0 N B:SER116 5.0 30.5 1.0 CB B:ASP287 5.0 35.8 1.0

S.Baranidharan, W.J.Ray Jr., Y.Liu. Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction To Be Published.