Cadmium in PDB 1cld: Dna-Binding Protein

The binding sites of Cadmium atom in the Dna-Binding Protein (pdb code 1cld). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Dna-Binding Protein, PDB code: 1cld:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Dna-Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd145 b:0.0 occ:1.00 HB2 A:CYS105 2.4 0.0 1.0 SG A:CYS98 2.5 0.2 1.0 SG A:CYS105 2.5 0.2 1.0 SG A:CYS112 2.5 0.2 1.0 SG A:CYS95 2.5 0.2 1.0 CB A:CYS105 2.9 0.2 1.0 HB3 A:CYS95 3.0 0.0 1.0 HB2 A:CYS112 3.1 0.0 1.0 HB2 A:ASN114 3.1 0.0 1.0 CB A:CYS112 3.1 0.1 1.0 H A:CYS98 3.2 0.0 1.0 HB3 A:CYS112 3.2 0.0 1.0 CB A:CYS95 3.4 0.2 1.0 H A:CYS95 3.4 0.0 1.0 HB2 A:CYS98 3.4 0.0 1.0 HA A:CYS105 3.4 0.0 1.0 HB3 A:ALA97 3.6 0.0 1.0 CB A:CYS98 3.6 0.2 1.0 CD A:CD146 3.6 0.0 1.0 HB3 A:CYS105 3.8 0.0 1.0 CA A:CYS105 3.8 0.2 1.0 N A:CYS98 3.9 0.2 1.0 CB A:ASN114 4.1 0.2 1.0 N A:CYS95 4.1 0.2 1.0 HB2 A:CYS95 4.2 0.0 1.0 H A:ASN114 4.2 0.0 1.0 HB3 A:ASN114 4.2 0.0 1.0 HD21 A:ASN114 4.2 0.0 1.0 CA A:CYS95 4.3 0.2 1.0 O A:LYS104 4.4 0.4 1.0 H A:SER106 4.4 0.0 1.0 CA A:CYS98 4.4 0.2 1.0 HB3 A:CYS98 4.4 0.0 1.0 CB A:ALA97 4.5 0.3 1.0 HB1 A:ALA97 4.5 0.0 1.0 CA A:CYS112 4.6 0.1 1.0 H A:CYS115 4.6 0.0 1.0 N A:CYS105 4.6 0.2 1.0 H A:ALA97 4.7 0.0 1.0 C A:CYS95 4.8 0.2 1.0 C A:LYS104 4.8 0.2 1.0 ND2 A:ASN114 4.8 1.2 1.0 HA A:CYS98 4.9 0.0 1.0 O A:CYS95 4.9 0.2 1.0 H A:CYS112 4.9 0.0 1.0 CG A:ASN114 4.9 1.1 1.0 H A:LYS107 4.9 0.0 1.0 C A:CYS105 4.9 0.2 1.0 OH A:TYR124 4.9 0.4 1.0 C A:ALA97 4.9 0.2 1.0 N A:ASN114 5.0 0.2 1.0

Cadmium binding site 2 out of 2 in the Dna-Binding Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Dna-Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd146 b:0.0 occ:1.00 HB1 A:ALA97 2.5 0.0 1.0 SG A:CYS115 2.5 0.2 1.0 SG A:CYS95 2.5 0.2 1.0 SG A:CYS122 2.5 0.2 1.0 SG A:CYS112 2.5 0.2 1.0 HB2 A:CYS122 2.6 0.0 1.0 HA A:CYS122 2.8 0.0 1.0 CB A:CYS122 2.9 0.2 1.0 HB2 A:CYS115 3.0 0.0 1.0 H A:CYS112 3.0 0.0 1.0 HB3 A:ALA97 3.2 0.0 1.0 CB A:ALA97 3.3 0.3 1.0 CB A:CYS115 3.3 0.2 1.0 CA A:CYS122 3.4 0.2 1.0 H A:ALA97 3.5 0.0 1.0 HB3 A:CYS112 3.6 0.0 1.0 CD A:CD145 3.6 0.0 1.0 CB A:CYS112 3.7 0.1 1.0 HB2 A:CYS95 3.7 0.0 1.0 CB A:CYS95 3.8 0.2 1.0 N A:CYS112 3.8 0.1 1.0 HB2 A:ALA97 3.9 0.0 1.0 HB3 A:CYS122 3.9 0.0 1.0 H A:CYS115 4.0 0.0 1.0 HB3 A:CYS115 4.0 0.0 1.0 H A:VAL123 4.2 0.0 1.0 HB3 A:CYS95 4.2 0.0 1.0 N A:ALA97 4.3 0.2 1.0 HA A:THR111 4.3 0.0 1.0 H A:CYS98 4.3 0.0 1.0 C A:CYS122 4.3 0.2 1.0 HG23 A:THR111 4.4 0.0 1.0 CA A:CYS112 4.4 0.1 1.0 CA A:ALA97 4.4 0.2 1.0 CA A:CYS115 4.4 0.2 1.0 N A:CYS115 4.4 0.2 1.0 N A:CYS122 4.5 0.3 1.0 HB2 A:CYS112 4.6 0.0 1.0 N A:VAL123 4.6 0.2 1.0 HA A:CYS115 4.7 0.0 1.0 C A:THR111 4.9 0.2 1.0 O A:CYS112 4.9 0.1 1.0 H A:CYS122 4.9 0.0 1.0 HB2 A:ASN114 5.0 0.0 1.0

K.H.Gardner, S.F.Anderson, J.E.Coleman. Solution Structure of the Kluyveromyces Lactis LAC9 CD2 CYS6 Dna-Binding Domain. Nat.Struct.Biol. V. 2 898 1995.
ISSN: ISSN 1072-8368
PubMed: 7552715
DOI: 10.1038/NSB1095-898