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Cadmium in PDB 1con: The Refined Structure of Cadmium Substituted Concanavalin A at 2.0 Angstroms Resolution

Protein crystallography data

The structure of The Refined Structure of Cadmium Substituted Concanavalin A at 2.0 Angstroms Resolution, PDB code: 1con was solved by J.H.Naismith, J.Habash, S.J.Harrop, J.R.Helliwell, W.N.Hunter, A.J.Kalb(Gilboa), J.Yariv, T.C.M.Wan, S.Weisgerber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 88.700, 86.500, 62.500, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / n/a

Cadmium Binding Sites:

The binding sites of Cadmium atom in the The Refined Structure of Cadmium Substituted Concanavalin A at 2.0 Angstroms Resolution (pdb code 1con). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the The Refined Structure of Cadmium Substituted Concanavalin A at 2.0 Angstroms Resolution, PDB code: 1con:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 1con

Go back to Cadmium Binding Sites List in 1con
Cadmium binding site 1 out of 2 in the The Refined Structure of Cadmium Substituted Concanavalin A at 2.0 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of The Refined Structure of Cadmium Substituted Concanavalin A at 2.0 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd238

b:14.4
occ:1.00
O A:HOH242 2.1 13.0 1.0
OD2 A:ASP10 2.1 16.0 1.0
OE2 A:GLU8 2.3 15.7 1.0
NE2 A:HIS24 2.3 9.0 1.0
OD1 A:ASP19 2.4 16.5 1.0
O A:HOH243 2.5 16.2 1.0
CG A:ASP19 3.1 8.4 1.0
CG A:ASP10 3.1 11.5 1.0
CD A:GLU8 3.2 10.5 1.0
CE1 A:HIS24 3.3 11.5 1.0
CD2 A:HIS24 3.3 6.1 1.0
OD2 A:ASP19 3.4 12.1 1.0
OE1 A:GLU8 3.5 10.8 1.0
CB A:ASP10 3.6 10.3 1.0
O A:HOH335 4.0 11.2 1.0
OD1 A:ASP10 4.2 13.2 1.0
CA A:CA239 4.2 11.2 1.0
OG A:SER34 4.2 16.9 1.0
O A:HOH246 4.2 27.5 1.0
CB A:ASP19 4.2 4.8 1.0
ND1 A:HIS24 4.4 10.4 1.0
CG A:HIS24 4.4 10.7 1.0
O A:VAL32 4.6 14.5 1.0
CG A:GLU8 4.6 5.3 1.0
CA A:ASP19 4.6 10.9 1.0

Cadmium binding site 2 out of 2 in 1con

Go back to Cadmium Binding Sites List in 1con
Cadmium binding site 2 out of 2 in the The Refined Structure of Cadmium Substituted Concanavalin A at 2.0 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of The Refined Structure of Cadmium Substituted Concanavalin A at 2.0 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd240

b:38.3
occ:1.00
OE2 A:GLU183 2.4 24.4 1.0
OE1 A:GLU183 2.5 31.0 1.0
OE1 A:GLU87 2.5 19.9 1.0
O A:HOH365 2.7 30.7 1.0
CD A:GLU183 2.8 41.7 1.0
O A:HOH344 2.8 34.4 1.0
CD A:GLU87 3.2 26.2 1.0
OE2 A:GLU87 3.3 17.8 1.0
NE2 A:HIS180 4.1 16.7 1.0
CG A:GLU183 4.3 14.4 1.0
CE1 A:HIS180 4.4 18.6 1.0
O A:HOH379 4.5 37.8 1.0
CG A:GLU87 4.6 17.1 1.0
O A:HOH377 4.7 42.1 1.0
NE1 A:TRP88 4.8 16.4 1.0

Reference:

J.H.Naismith, J.Habash, S.Harrop, J.R.Helliwell, W.N.Hunter, T.C.Wan, S.Weisgerber, A.J.Kalb, J.Yariv. Refined Structure of Cadmium-Substituted Concanavalin A at 2.0 A Resolution. Acta Crystallogr.,Sect.D V. 49 561 1993.
ISSN: ISSN 0907-4449
PubMed: 15299493
DOI: 10.1107/S0907444993006390
Page generated: Fri Aug 28 11:41:14 2020
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