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Cadmium in PDB 1crb: Crystallographic Studies on A Family of Cellular Lipophilic Transport Proteins. Refinement of P2 Myelin Protein and the Structure Determination and Refinement of Cellular Retinol-Binding Protein in Complex with All-Trans-Retinol

Protein crystallography data

The structure of Crystallographic Studies on A Family of Cellular Lipophilic Transport Proteins. Refinement of P2 Myelin Protein and the Structure Determination and Refinement of Cellular Retinol-Binding Protein in Complex with All-Trans-Retinol, PDB code: 1crb was solved by S.W.Cowan, T.A.Jones, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.090, 47.390, 69.340, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 24.8

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystallographic Studies on A Family of Cellular Lipophilic Transport Proteins. Refinement of P2 Myelin Protein and the Structure Determination and Refinement of Cellular Retinol-Binding Protein in Complex with All-Trans-Retinol (pdb code 1crb). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Crystallographic Studies on A Family of Cellular Lipophilic Transport Proteins. Refinement of P2 Myelin Protein and the Structure Determination and Refinement of Cellular Retinol-Binding Protein in Complex with All-Trans-Retinol, PDB code: 1crb:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 1crb

Go back to Cadmium Binding Sites List in 1crb
Cadmium binding site 1 out of 2 in the Crystallographic Studies on A Family of Cellular Lipophilic Transport Proteins. Refinement of P2 Myelin Protein and the Structure Determination and Refinement of Cellular Retinol-Binding Protein in Complex with All-Trans-Retinol


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystallographic Studies on A Family of Cellular Lipophilic Transport Proteins. Refinement of P2 Myelin Protein and the Structure Determination and Refinement of Cellular Retinol-Binding Protein in Complex with All-Trans-Retinol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd201

b:25.4
occ:1.00
OD1 A:ASP91 2.5 4.3 1.0
OD2 A:ASP91 2.6 12.1 1.0
CG A:ASP91 2.9 10.4 1.0
O A:PRO1 4.3 19.8 1.0
N A:PRO1 4.3 24.6 1.0
CB A:ASP91 4.4 7.1 1.0

Cadmium binding site 2 out of 2 in 1crb

Go back to Cadmium Binding Sites List in 1crb
Cadmium binding site 2 out of 2 in the Crystallographic Studies on A Family of Cellular Lipophilic Transport Proteins. Refinement of P2 Myelin Protein and the Structure Determination and Refinement of Cellular Retinol-Binding Protein in Complex with All-Trans-Retinol


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystallographic Studies on A Family of Cellular Lipophilic Transport Proteins. Refinement of P2 Myelin Protein and the Structure Determination and Refinement of Cellular Retinol-Binding Protein in Complex with All-Trans-Retinol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd202

b:42.2
occ:1.00
OE1 A:GLU118 2.6 11.8 1.0
OE2 A:GLU118 2.8 14.2 1.0
CD A:GLU118 3.0 11.9 1.0
O A:HOH349 4.1 20.7 1.0
CE A:LYS127 4.1 26.8 1.0
O A:HOH366 4.2 29.6 1.0
CG A:GLU118 4.5 14.3 1.0
NZ A:LYS127 4.6 31.0 1.0

Reference:

S.W.Cowan, M.E.Newcomer, T.A.Jones. Crystallographic Studies on A Family of Cellular Lipophilic Transport Proteins. Refinement of P2 Myelin Protein and the Structure Determination and Refinement of Cellular Retinol-Binding Protein in Complex with All-Trans-Retinol. J.Mol.Biol. V. 230 1225 1993.
ISSN: ISSN 0022-2836
PubMed: 7683727
DOI: 10.1006/JMBI.1993.1238
Page generated: Sat Dec 12 08:08:34 2020

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