Chemical elements
  Cadmium
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    Chemical Properties
    PDB 1a4k-1exq
      1a4k
      1a5z
      1aaz
      1aew
      1aiz
      1aqb
      1aw6
      1aw9
      1axs
      1bhq
      1c1j
      1c47
      1c6r
      1ca1
      1cdp
      1cf8
      1cfz
      1cld
      1con
      1crb
      1cvm
      1cyi
      1cyj
      1d5b
      1d5i
      1d66
      1d6v
      1d7b
      1d7c
      1d7d
      1dat
      1dcd
      1dfs
      1dft
      1dl5
      1dmc
      1dmd
      1dme
      1dmf
      1dpe
      1ds8
      1dv3
      1dyp
      1ee3
      1ell
      1elm
      1esf
      1et7
      1eu1
      1exq
    PDB 1f48-1ihu
    PDB 1ii0-1mhu
    PDB 1mms-1qvg
    PDB 1qy0-1wb6
    PDB 1wje-2avp
    PDB 2b3p-2j6e
    PDB 2jdz-2x05
    PDB 2x09-3ccj
    PDB 3ccl-3ggf
    PDB 3h1u-3p5v
    PDB 3p5w-8ice

Cadmium in the structure of Unliganded Mature Oxy-Cope Catalytic Antibody (pdb 1d5b)






The binding sites of Cadmium atom in the structure of Unliganded Mature Oxy-Cope Catalytic Antibody (pdb code 1d5b). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom.
The 1d5b structure was solved by E.C.MUNDORFF, M.A.HANSON, P.G.SCHULTZ, R.C.STEVENS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.8
Space groupP212121
a (A)77.420
b (A)80.670
c (A)134.750
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)23.2
Rfree (%)28.5


Cadmium Binding Sites:

Cadmium binding site 1 out of 1 in 1d5b


Cadmium binding site 1 out of 1 in 1d5b
Click to enlarge
stereopicture of Cadmium binding site 1 out of 1 in 1d5b
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 1d5b. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp1, A: Ile2, A: Gln27, A: Glu93,

conact list:


AtomAtomDistance (A)
CdCB A:Asp14.84
CdOD2 A:Asp12.85
CdOD1 A:Asp13.65
CdCG A:Asp13.54
CdCG1 A:Ile24.76
CdNE2 A:Gln273.46
CdOE1 A:Gln272.88
CdCD A:Gln273.53
CdCG A:Gln274.97
CdOE1 A:Glu932.74
CdOE2 A:Glu933.51
CdCD A:Glu933.49
CdCG A:Glu934.94

interactive model:




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