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Cadmium in PDB 1d5b: Unliganded Mature Oxy-Cope Catalytic Antibody

Protein crystallography data

The structure of Unliganded Mature Oxy-Cope Catalytic Antibody, PDB code: 1d5b was solved by E.C.Mundorff, M.A.Hanson, P.G.Schultz, R.C.Stevens, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 77.420, 80.670, 134.750, 90.00, 90.00, 90.00
R / Rfree (%) 23.2 / 28.5

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Unliganded Mature Oxy-Cope Catalytic Antibody (pdb code 1d5b). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Unliganded Mature Oxy-Cope Catalytic Antibody, PDB code: 1d5b:

Cadmium binding site 1 out of 1 in 1d5b

Go back to Cadmium Binding Sites List in 1d5b
Cadmium binding site 1 out of 1 in the Unliganded Mature Oxy-Cope Catalytic Antibody


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Unliganded Mature Oxy-Cope Catalytic Antibody within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd212

b:52.6
occ:1.00
OE1 A:GLU93 2.7 27.2 1.0
OD2 A:ASP1 2.9 84.0 1.0
OE1 A:GLN27 2.9 89.8 1.0
NE2 A:GLN27 3.5 89.8 1.0
CD A:GLU93 3.5 27.2 1.0
OE2 A:GLU93 3.5 27.2 1.0
CD A:GLN27 3.5 89.8 1.0
CG A:ASP1 3.5 94.4 1.0
OD1 A:ASP1 3.6 84.0 1.0
CG1 A:ILE2 4.8 37.8 1.0
CB A:ASP1 4.8 94.4 1.0
CG A:GLU93 4.9 27.2 1.0
CG A:GLN27 5.0 89.8 1.0

Reference:

E.C.Mundorff, M.A.Hanson, A.Varvak, H.Ulrich, P.G.Schultz, R.C.Stevens. Conformational Effects in Biological Catalysis: An Antibody-Catalyzed Oxy-Cope Rearrangement. Biochemistry V. 39 627 2000.
ISSN: ISSN 0006-2960
PubMed: 10651626
DOI: 10.1021/BI9924314
Page generated: Fri Aug 28 11:42:01 2020
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