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Cadmium in PDB 1dat: Cubic Crystal Structure Recombinant Horse L Apoferritin

Protein crystallography data

The structure of Cubic Crystal Structure Recombinant Horse L Apoferritin, PDB code: 1dat was solved by B.Gallois, T.Granier, B.Langlois D'estaintot, R.R.Crichton, F.Roland, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.05
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 183.700, 183.700, 183.700, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / n/a

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Cubic Crystal Structure Recombinant Horse L Apoferritin (pdb code 1dat). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Cubic Crystal Structure Recombinant Horse L Apoferritin, PDB code: 1dat:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in 1dat

Go back to Cadmium Binding Sites List in 1dat
Cadmium binding site 1 out of 3 in the Cubic Crystal Structure Recombinant Horse L Apoferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Cubic Crystal Structure Recombinant Horse L Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd201

b:48.5
occ:0.33
OE1 A:GLU130 2.5 32.5 1.0
CD A:GLU130 3.4 26.0 1.0
OE2 A:GLU130 3.6 21.4 1.0
CD A:CD202 4.4 9.3 0.3
CG A:GLU130 4.8 24.3 1.0
O A:HOH271 4.9 20.0 1.0

Cadmium binding site 2 out of 3 in 1dat

Go back to Cadmium Binding Sites List in 1dat
Cadmium binding site 2 out of 3 in the Cubic Crystal Structure Recombinant Horse L Apoferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Cubic Crystal Structure Recombinant Horse L Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd202

b:9.3
occ:0.33
OD1 A:ASP127 3.4 34.0 1.0
CD A:CD201 4.4 48.5 0.3
OE1 A:GLU130 4.4 32.5 1.0
CG A:ASP127 4.6 28.9 1.0

Cadmium binding site 3 out of 3 in 1dat

Go back to Cadmium Binding Sites List in 1dat
Cadmium binding site 3 out of 3 in the Cubic Crystal Structure Recombinant Horse L Apoferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Cubic Crystal Structure Recombinant Horse L Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd203

b:7.8
occ:0.50
OD2 A:ASP80 2.4 21.5 1.0
OD1 A:ASP80 2.9 15.2 1.0
CG A:ASP80 3.0 17.9 1.0
CB A:ASP80 4.4 14.2 1.0
O A:HOH272 4.6 20.4 1.0

Reference:

B.Gallois, B.L.Destaintot, M.A.Michaux, A.Dautant, T.Granier, G.Precigoux, J.A.Soruco, F.Roland, O.Chavasalba, A.Herbas, R.R.Crichton. X-Ray Structure of Recombinant Horse L-Chain Apoferritin at 2.0 Angstrom Resolution: Implications For Stability and Function. J.Biol.Inorg.Chem. V. 2 360 1997.
ISSN: ISSN 0949-8257
Page generated: Thu Jul 10 10:33:49 2025

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