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Cadmium in PDB 1dfs: Solution Structure of the Alpha-Domain of Mouse Metallothionein-1

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Solution Structure of the Alpha-Domain of Mouse Metallothionein-1 (pdb code 1dfs). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Solution Structure of the Alpha-Domain of Mouse Metallothionein-1, PDB code: 1dfs:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in 1dfs

Go back to Cadmium Binding Sites List in 1dfs
Cadmium binding site 1 out of 4 in the Solution Structure of the Alpha-Domain of Mouse Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Solution Structure of the Alpha-Domain of Mouse Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd32

b:0.3
occ:1.00
HG A:CYS29 2.1 1.2 1.0
SG A:CYS20 2.5 0.3 1.0
SG A:CYS27 2.5 0.6 1.0
SG A:CYS29 2.5 0.8 1.0
SG A:CYS30 2.5 0.3 1.0
HG A:CYS20 2.7 0.9 1.0
HG A:CYS30 3.0 1.0 1.0
HB2 A:CYS27 3.1 0.9 1.0
HG A:CYS27 3.3 1.1 1.0
H A:CYS30 3.3 0.4 1.0
HB2 A:CYS30 3.3 0.8 1.0
CB A:CYS27 3.4 0.6 1.0
HG12 A:VAL19 3.4 1.3 1.0
CB A:CYS30 3.5 0.5 1.0
HB3 A:CYS27 3.6 0.9 1.0
N A:CYS30 3.7 0.3 1.0
H A:CYS29 3.9 0.3 1.0
CD A:CD34 4.0 0.2 1.0
HG A:CYS7 4.0 0.9 1.0
CB A:CYS29 4.0 0.4 1.0
CD A:CD35 4.0 0.3 1.0
HA A:CYS20 4.0 0.4 1.0
CB A:CYS20 4.0 0.3 1.0
SG A:CYS7 4.2 0.3 1.0
C A:CYS29 4.3 0.3 1.0
CA A:CYS30 4.3 0.4 1.0
CG1 A:VAL19 4.4 0.8 1.0
HG11 A:VAL19 4.4 1.4 1.0
CA A:CYS29 4.4 0.3 1.0
HB3 A:CYS30 4.4 0.9 1.0
CA A:CYS20 4.5 0.3 1.0
HB2 A:CYS29 4.5 0.8 1.0
HG A:CYS14 4.5 0.9 1.0
HB3 A:CYS20 4.5 0.4 1.0
H A:CYS20 4.5 0.3 1.0
N A:CYS29 4.6 0.3 1.0
N A:CYS20 4.6 0.3 1.0
HB3 A:CYS29 4.8 0.8 1.0
HB2 A:CYS20 4.8 0.3 1.0
HG13 A:VAL19 4.9 1.5 1.0
HA A:CYS30 4.9 0.4 1.0
SG A:CYS14 5.0 0.3 1.0
CA A:CYS27 5.0 0.5 1.0

Cadmium binding site 2 out of 4 in 1dfs

Go back to Cadmium Binding Sites List in 1dfs
Cadmium binding site 2 out of 4 in the Solution Structure of the Alpha-Domain of Mouse Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Solution Structure of the Alpha-Domain of Mouse Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd33

b:0.4
occ:1.00
HG A:CYS4 1.9 1.1 1.0
SG A:CYS18 2.5 0.4 1.0
SG A:CYS4 2.5 0.7 1.0
SG A:CYS3 2.6 0.5 1.0
SG A:CYS14 2.6 0.3 1.0
HG A:CYS14 2.7 0.9 1.0
HG A:CYS18 3.0 1.0 1.0
HB3 A:CYS14 3.0 0.3 1.0
HG A:CYS3 3.1 1.1 1.0
CB A:CYS14 3.4 0.2 1.0
HG A:CYS20 3.6 0.9 1.0
HA A:CYS18 3.7 0.3 1.0
HB2 A:CYS4 3.7 2.2 1.0
CB A:CYS18 3.7 0.3 1.0
HB2 A:CYS18 3.7 0.4 1.0
CB A:CYS4 3.8 1.4 1.0
HB2 A:CYS20 3.9 0.3 1.0
HB2 A:CYS14 4.0 0.3 1.0
CD A:CD35 4.0 0.3 1.0
HB2 A:CYS3 4.0 0.8 1.0
CB A:CYS3 4.0 0.6 1.0
H A:CYS4 4.1 0.6 1.0
H A:VAL19 4.2 0.3 1.0
CA A:CYS18 4.3 0.3 1.0
H A:CYS20 4.3 0.3 1.0
SG A:CYS20 4.3 0.3 1.0
N A:CYS4 4.4 0.5 1.0
CD A:CD34 4.4 0.2 1.0
HB3 A:CYS4 4.6 2.1 1.0
HB3 A:CYS18 4.6 0.4 1.0
CB A:CYS20 4.7 0.3 1.0
HA A:CYS14 4.7 0.3 1.0
CA A:CYS4 4.8 0.6 1.0
CA A:CYS14 4.8 0.3 1.0
HB3 A:CYS3 4.8 0.8 1.0
HB2 A:CYS7 4.8 0.5 1.0
C A:CYS3 4.9 0.6 1.0
SG A:CYS7 4.9 0.3 1.0

Cadmium binding site 3 out of 4 in 1dfs

Go back to Cadmium Binding Sites List in 1dfs
Cadmium binding site 3 out of 4 in the Solution Structure of the Alpha-Domain of Mouse Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Solution Structure of the Alpha-Domain of Mouse Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd34

b:0.2
occ:1.00
HG A:CYS30 1.6 1.0 1.0
HG A:CYS14 1.9 0.9 1.0
HG A:CYS11 2.0 0.9 1.0
SG A:CYS7 2.5 0.3 1.0
SG A:CYS30 2.5 0.3 1.0
HG A:CYS7 2.6 0.9 1.0
SG A:CYS11 2.6 0.3 1.0
SG A:CYS14 2.6 0.3 1.0
HB2 A:CYS14 3.0 0.3 1.0
CB A:CYS14 3.4 0.2 1.0
HB3 A:CYS7 3.6 0.6 1.0
HG A:CYS20 3.6 0.9 1.0
HB3 A:CYS30 3.7 0.9 1.0
H A:CYS14 3.7 0.2 1.0
CB A:CYS7 3.7 0.4 1.0
CB A:CYS30 3.7 0.5 1.0
HB2 A:CYS11 3.8 0.3 1.0
CB A:CYS11 3.8 0.3 1.0
HB3 A:CYS11 3.8 0.3 1.0
HB2 A:CYS7 3.9 0.5 1.0
HB2 A:CYS30 3.9 0.8 1.0
CD A:CD32 4.0 0.3 1.0
CD A:CD35 4.0 0.3 1.0
HB2 A:LYS13 4.1 0.3 1.0
HB3 A:CYS14 4.1 0.3 1.0
HG A:CYS4 4.3 1.1 1.0
SG A:CYS20 4.3 0.3 1.0
N A:CYS14 4.3 0.2 1.0
HG12 A:VAL19 4.4 1.3 1.0
HG13 A:VAL19 4.4 1.5 1.0
CD A:CD33 4.4 0.4 1.0
CA A:CYS14 4.6 0.3 1.0
CG1 A:VAL19 4.8 0.8 1.0
HG11 A:VAL19 4.9 1.4 1.0
H A:LYS13 4.9 0.3 1.0

Cadmium binding site 4 out of 4 in 1dfs

Go back to Cadmium Binding Sites List in 1dfs
Cadmium binding site 4 out of 4 in the Solution Structure of the Alpha-Domain of Mouse Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Solution Structure of the Alpha-Domain of Mouse Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd35

b:0.3
occ:1.00
HG A:CYS4 2.3 1.1 1.0
HG A:CYS20 2.5 0.9 1.0
SG A:CYS20 2.5 0.3 1.0
SG A:CYS4 2.5 0.7 1.0
SG A:CYS6 2.5 0.8 1.0
SG A:CYS7 2.5 0.3 1.0
HB3 A:CYS4 2.9 2.1 1.0
HG A:CYS6 3.0 1.4 1.0
CB A:CYS4 3.2 1.4 1.0
HG A:CYS7 3.2 0.9 1.0
HB2 A:CYS4 3.4 2.2 1.0
H A:CYS7 3.5 0.7 1.0
HB2 A:CYS7 3.6 0.5 1.0
CB A:CYS7 3.7 0.4 1.0
HG A:CYS14 3.7 0.9 1.0
CB A:CYS20 3.8 0.3 1.0
HB2 A:CYS20 3.8 0.3 1.0
N A:CYS7 3.9 0.4 1.0
HB3 A:CYS20 3.9 0.4 1.0
CD A:CD34 4.0 0.2 1.0
HG A:CYS27 4.0 1.1 1.0
CD A:CD32 4.0 0.3 1.0
CD A:CD33 4.0 0.4 1.0
CB A:CYS6 4.1 0.3 1.0
SG A:CYS27 4.2 0.6 1.0
HB3 A:CYS27 4.2 0.9 1.0
H A:CYS6 4.3 0.4 1.0
HB2 A:CYS6 4.4 0.9 1.0
CA A:CYS7 4.4 0.4 1.0
SG A:CYS14 4.5 0.3 1.0
C A:CYS6 4.5 0.3 1.0
HG A:CYS30 4.6 1.0 1.0
HB3 A:CYS7 4.6 0.6 1.0
CA A:CYS6 4.7 0.3 1.0
HA A:ALA23 4.7 2.3 1.0
CB A:CYS27 4.8 0.6 1.0
CA A:CYS4 4.8 0.6 1.0
HB3 A:CYS6 4.9 0.8 1.0
HA A:CYS7 4.9 0.4 1.0
N A:CYS6 4.9 0.3 1.0

Reference:

K.Zangger, G.Oz, J.D.Otvos, I.M.Armitage. Three-Dimensional Solution Structure of Mouse [CD7]-Metallothionein-1 By Homonuclear and Heteronuclear uc(Nmr) Spectroscopy. Protein Sci. V. 8 2630 1999.
ISSN: ISSN 0961-8368
PubMed: 10631978
Page generated: Sat Dec 12 08:08:43 2020

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