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Cadmium in PDB 1dft: Solution Structure of the Beta-Domain of Mouse Metallothionein-1

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Solution Structure of the Beta-Domain of Mouse Metallothionein-1 (pdb code 1dft). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Solution Structure of the Beta-Domain of Mouse Metallothionein-1, PDB code: 1dft:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in 1dft

Go back to Cadmium Binding Sites List in 1dft
Cadmium binding site 1 out of 3 in the Solution Structure of the Beta-Domain of Mouse Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Solution Structure of the Beta-Domain of Mouse Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd31

b:0.7
occ:1.00
HG A:CYS24 1.8 1.3 1.0
HG A:CYS15 2.3 1.3 1.0
SG A:CYS19 2.5 1.1 1.0
SG A:CYS24 2.5 0.9 1.0
SG A:CYS29 2.6 0.9 1.0
SG A:CYS15 2.6 1.2 1.0
HG A:CYS19 2.6 1.4 1.0
HG A:CYS29 3.0 1.0 1.0
HB2 A:CYS24 3.2 1.0 1.0
HB3 A:CYS15 3.5 1.2 1.0
CB A:CYS24 3.5 1.0 1.0
CB A:CYS15 3.7 0.8 1.0
HB2 A:CYS19 3.9 1.9 1.0
HB3 A:CYS24 4.0 1.1 1.0
CB A:CYS19 4.0 1.1 1.0
HB2 A:CYS26 4.0 0.9 1.0
CD A:CD33 4.0 1.0 1.0
CB A:CYS29 4.0 1.1 1.0
HG A:CYS21 4.1 1.1 1.0
HB3 A:CYS29 4.1 1.3 1.0
CD A:CD32 4.1 0.9 1.0
HB2 A:CYS29 4.3 1.1 1.0
HB2 A:CYS15 4.4 1.0 1.0
HB2 A:CYS21 4.4 0.7 1.0
O A:ASN23 4.5 1.4 1.0
HG A:CYS7 4.5 1.5 1.0
HB3 A:CYS19 4.6 1.6 1.0
HA A:CYS15 4.7 1.2 1.0
SG A:CYS26 4.7 1.0 1.0
CB A:CYS26 4.8 0.9 1.0
CA A:CYS15 4.9 0.9 1.0
SG A:CYS21 4.9 1.0 1.0
SG A:CYS7 5.0 1.2 1.0

Cadmium binding site 2 out of 3 in 1dft

Go back to Cadmium Binding Sites List in 1dft
Cadmium binding site 2 out of 3 in the Solution Structure of the Beta-Domain of Mouse Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Solution Structure of the Beta-Domain of Mouse Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd32

b:0.9
occ:1.00
HG A:CYS5 1.7 1.1 1.0
HG A:CYS7 2.2 1.5 1.0
HG A:CYS21 2.4 1.1 1.0
HG A:CYS24 2.5 1.3 1.0
SG A:CYS24 2.5 0.9 1.0
SG A:CYS7 2.5 1.2 1.0
HB2 A:CYS5 2.6 1.6 1.0
SG A:CYS5 2.6 1.0 1.0
SG A:CYS21 2.6 1.0 1.0
CB A:CYS5 3.1 1.2 1.0
HB3 A:CYS24 3.3 1.1 1.0
HB3 A:CYS5 3.4 1.4 1.0
HB3 A:CYS21 3.5 1.0 1.0
CB A:CYS21 3.6 0.9 1.0
CB A:CYS24 3.6 1.0 1.0
HB2 A:CYS21 3.7 0.7 1.0
CB A:CYS7 3.9 1.0 1.0
HB2 A:CYS7 4.0 1.1 1.0
CD A:CD33 4.0 1.0 1.0
CD A:CD31 4.1 0.7 1.0
H A:CYS7 4.1 1.1 1.0
HB2 A:CYS24 4.3 1.0 1.0
H A:SER6 4.3 0.9 1.0
HA A:CYS24 4.5 1.3 1.0
N A:CYS7 4.5 0.9 1.0
CA A:CYS5 4.6 0.8 1.0
HG A:CYS15 4.7 1.3 1.0
HG A:CYS19 4.7 1.4 1.0
CA A:CYS7 4.7 1.1 1.0
CA A:CYS24 4.7 1.1 1.0
HB3 A:CYS7 4.7 1.2 1.0
HA A:CYS7 4.8 1.2 1.0
SG A:CYS15 4.8 1.2 1.0
HA A:CYS5 4.8 1.1 1.0
SG A:CYS19 4.9 1.1 1.0
N A:SER6 4.9 0.8 1.0
SG A:CYS26 5.0 1.0 1.0

Cadmium binding site 3 out of 3 in 1dft

Go back to Cadmium Binding Sites List in 1dft
Cadmium binding site 3 out of 3 in the Solution Structure of the Beta-Domain of Mouse Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Solution Structure of the Beta-Domain of Mouse Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd33

b:1.0
occ:1.00
HG A:CYS7 2.2 1.5 1.0
SG A:CYS26 2.5 1.0 1.0
SG A:CYS13 2.5 1.1 1.0
SG A:CYS15 2.6 1.2 1.0
SG A:CYS7 2.6 1.2 1.0
HG A:CYS26 3.0 1.4 1.0
HG A:CYS13 3.2 1.6 1.0
HG A:CYS15 3.2 1.3 1.0
HB3 A:CYS7 3.6 1.2 1.0
HB2 A:CYS13 3.7 1.4 1.0
CB A:CYS7 3.7 1.0 1.0
HG A:CYS24 3.7 1.3 1.0
HB2 A:CYS15 3.7 1.0 1.0
HB3 A:CYS26 3.8 1.0 1.0
CB A:CYS26 3.8 0.9 1.0
CB A:CYS13 3.9 1.0 1.0
CB A:CYS15 3.9 0.8 1.0
CD A:CD32 4.0 0.9 1.0
CD A:CD31 4.0 0.7 1.0
HB2 A:CYS26 4.0 0.9 1.0
HB2 A:CYS7 4.0 1.1 1.0
HB3 A:CYS24 4.2 1.1 1.0
HB3 A:CYS13 4.5 1.3 1.0
HB3 A:CYS15 4.5 1.2 1.0
SG A:CYS24 4.5 0.9 1.0
HG A:CYS5 4.6 1.1 1.0
HB2 A:CYS24 4.7 1.0 1.0
CB A:CYS24 4.8 1.0 1.0

Reference:

K.Zangger, G.Oz, J.D.Otvos, I.M.Armitage. Three-Dimensional Solution Structure of Mouse [CD7]-Metallothionein-1 By Homonuclear and Heteronuclear uc(Nmr) Spectroscopy. Protein Sci. V. 8 2630 1999.
ISSN: ISSN 0961-8368
PubMed: 10631978
Page generated: Fri Aug 28 11:43:42 2020
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