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Cadmium in PDB 1dme: The Three-Dimensional Solution Structure of Callinectes Sapidus Metallothionein-I Determined By Homonuclear and Heteronuclear Magnetic Resonance Spectoscopy

Cadmium Binding Sites:

The binding sites of Cadmium atom in the The Three-Dimensional Solution Structure of Callinectes Sapidus Metallothionein-I Determined By Homonuclear and Heteronuclear Magnetic Resonance Spectoscopy (pdb code 1dme). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the The Three-Dimensional Solution Structure of Callinectes Sapidus Metallothionein-I Determined By Homonuclear and Heteronuclear Magnetic Resonance Spectoscopy, PDB code: 1dme:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in 1dme

Go back to Cadmium Binding Sites List in 1dme
Cadmium binding site 1 out of 3 in the The Three-Dimensional Solution Structure of Callinectes Sapidus Metallothionein-I Determined By Homonuclear and Heteronuclear Magnetic Resonance Spectoscopy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of The Three-Dimensional Solution Structure of Callinectes Sapidus Metallothionein-I Determined By Homonuclear and Heteronuclear Magnetic Resonance Spectoscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd103

b:0.0
occ:1.00
SG A:CYS16 2.5 0.0 1.0
SG A:CYS5 2.5 0.0 1.0
SG A:CYS20 2.5 0.0 1.0
SG A:CYS4 2.5 0.0 1.0
HA A:CYS20 3.1 0.0 1.0
H A:CYS5 3.1 0.0 1.0
CD A:CD105 3.2 0.0 1.0
HB2 A:CYS4 3.3 0.0 1.0
HB2 A:CYS5 3.4 0.0 1.0
HB3 A:CYS16 3.4 0.0 1.0
HA A:CYS16 3.4 0.0 1.0
CB A:CYS16 3.5 0.0 1.0
CB A:CYS20 3.5 0.0 1.0
CB A:CYS4 3.5 0.0 1.0
HG21 A:VAL10 3.5 0.0 1.0
HB2 A:CYS20 3.6 0.0 1.0
HB3 A:CYS22 3.6 0.0 1.0
CB A:CYS5 3.6 0.0 1.0
CD A:CD104 3.6 0.0 1.0
N A:CYS5 3.7 0.0 1.0
H A:LYS17 3.7 0.0 1.0
CA A:CYS20 3.8 0.0 1.0
CA A:CYS16 4.0 0.0 1.0
H A:VAL10 4.0 0.0 1.0
SG A:CYS25 4.1 0.0 1.0
CA A:CYS5 4.2 0.0 1.0
HB3 A:CYS4 4.3 0.0 1.0
SG A:CYS27 4.3 0.0 1.0
C A:CYS4 4.4 0.0 1.0
HB3 A:CYS5 4.5 0.0 1.0
HB2 A:CYS16 4.5 0.0 1.0
CG2 A:VAL10 4.5 0.0 1.0
HB3 A:CYS20 4.5 0.0 1.0
N A:LYS17 4.5 0.0 1.0
HG23 A:VAL10 4.6 0.0 1.0
CA A:CYS4 4.6 0.0 1.0
H A:CYS22 4.6 0.0 1.0
HB2 A:CYS11 4.6 0.0 1.0
CB A:CYS22 4.6 0.0 1.0
HA A:CYS9 4.6 0.0 1.0
H A:CYS4 4.6 0.0 1.0
HA A:CYS5 4.7 0.0 1.0
N A:CYS20 4.8 0.0 1.0
C A:CYS20 4.8 0.0 1.0
HG22 A:VAL10 4.8 0.0 1.0
C A:CYS16 4.8 0.0 1.0
H A:GLN21 4.8 0.0 1.0
N A:VAL10 4.9 0.0 1.0

Cadmium binding site 2 out of 3 in 1dme

Go back to Cadmium Binding Sites List in 1dme
Cadmium binding site 2 out of 3 in the The Three-Dimensional Solution Structure of Callinectes Sapidus Metallothionein-I Determined By Homonuclear and Heteronuclear Magnetic Resonance Spectoscopy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of The Three-Dimensional Solution Structure of Callinectes Sapidus Metallothionein-I Determined By Homonuclear and Heteronuclear Magnetic Resonance Spectoscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd104

b:0.0
occ:1.00
SG A:CYS22 2.5 0.0 1.0
SG A:CYS9 2.6 0.0 1.0
SG A:CYS5 2.6 0.0 1.0
SG A:CYS25 2.6 0.0 1.0
HA A:CYS9 2.8 0.0 1.0
HB3 A:CYS22 3.0 0.0 1.0
HB3 A:CYS25 3.2 0.0 1.0
HB2 A:CYS11 3.3 0.0 1.0
CB A:CYS22 3.4 0.0 1.0
CB A:CYS25 3.5 0.0 1.0
H A:CYS25 3.5 0.0 1.0
CA A:CYS9 3.6 0.0 1.0
HB2 A:SER24 3.6 0.0 1.0
CB A:CYS9 3.6 0.0 1.0
CD A:CD103 3.6 0.0 1.0
HB3 A:CYS5 3.7 0.0 1.0
CB A:CYS5 3.7 0.0 1.0
H A:VAL10 3.7 0.0 1.0
HB2 A:CYS9 3.8 0.0 1.0
HB2 A:CYS5 3.9 0.0 1.0
HB2 A:CYS22 3.9 0.0 1.0
N A:CYS25 4.0 0.0 1.0
H A:CYS11 4.0 0.0 1.0
CD A:CD105 4.0 0.0 1.0
SG A:CYS20 4.0 0.0 1.0
O A:CYS22 4.1 0.0 1.0
N A:VAL10 4.3 0.0 1.0
SG A:CYS16 4.3 0.0 1.0
C A:CYS9 4.3 0.0 1.0
H A:SER24 4.3 0.0 1.0
HB2 A:CYS25 4.4 0.0 1.0
CA A:CYS25 4.4 0.0 1.0
CB A:CYS11 4.4 0.0 1.0
C A:CYS22 4.6 0.0 1.0
HB3 A:CYS9 4.6 0.0 1.0
CA A:CYS22 4.6 0.0 1.0
N A:CYS11 4.6 0.0 1.0
CB A:SER24 4.6 0.0 1.0
C A:SER24 4.7 0.0 1.0
O A:LYS8 4.7 0.0 1.0
HB3 A:CYS11 4.7 0.0 1.0
N A:SER24 4.8 0.0 1.0
N A:CYS9 4.8 0.0 1.0
HA A:CYS25 4.9 0.0 1.0
CA A:SER24 5.0 0.0 1.0
HG21 A:VAL10 5.0 0.0 1.0

Cadmium binding site 3 out of 3 in 1dme

Go back to Cadmium Binding Sites List in 1dme
Cadmium binding site 3 out of 3 in the The Three-Dimensional Solution Structure of Callinectes Sapidus Metallothionein-I Determined By Homonuclear and Heteronuclear Magnetic Resonance Spectoscopy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of The Three-Dimensional Solution Structure of Callinectes Sapidus Metallothionein-I Determined By Homonuclear and Heteronuclear Magnetic Resonance Spectoscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd105

b:0.0
occ:1.00
SG A:CYS11 2.5 0.0 1.0
SG A:CYS16 2.5 0.0 1.0
SG A:CYS27 2.6 0.0 1.0
SG A:CYS25 2.6 0.0 1.0
HB2 A:CYS11 2.8 0.0 1.0
SG A:CYS20 3.0 0.0 1.0
CB A:CYS11 3.2 0.0 1.0
CD A:CD103 3.2 0.0 1.0
HB2 A:CYS27 3.3 0.0 1.0
HB2 A:CYS25 3.3 0.0 1.0
CB A:CYS27 3.4 0.0 1.0
HA A:CYS27 3.4 0.0 1.0
CB A:CYS25 3.5 0.0 1.0
HA A:CYS11 3.7 0.0 1.0
CB A:CYS16 3.7 0.0 1.0
HB3 A:CYS16 3.7 0.0 1.0
HB3 A:CYS25 3.8 0.0 1.0
CA A:CYS27 3.9 0.0 1.0
CA A:CYS11 3.9 0.0 1.0
HB2 A:CYS20 3.9 0.0 1.0
HB2 A:CYS16 4.0 0.0 1.0
CD A:CD104 4.0 0.0 1.0
HB3 A:CYS11 4.0 0.0 1.0
H A:CYS27 4.0 0.0 1.0
CB A:CYS20 4.2 0.0 1.0
N A:CYS27 4.2 0.0 1.0
HB3 A:CYS27 4.4 0.0 1.0
N A:CYS11 4.4 0.0 1.0
H A:ARG26 4.4 0.0 1.0
H A:CYS11 4.5 0.0 1.0
HB3 A:CYS20 4.7 0.0 1.0
SG A:CYS5 4.8 0.0 1.0
HG21 A:VAL10 4.9 0.0 1.0
CA A:CYS25 4.9 0.0 1.0
N A:ARG26 5.0 0.0 1.0

Reference:

S.S.Narula, M.Brouwer, Y.Hua, I.M.Armitage. Three-Dimensional Solution Structure of Callinectes Sapidus Metallothionein-1 Determined By Homonuclear and Heteronuclear Magnetic Resonance Spectroscopy. Biochemistry V. 34 620 1995.
ISSN: ISSN 0006-2960
PubMed: 7819257
DOI: 10.1021/BI00002A029
Page generated: Wed Oct 28 09:52:53 2020
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