Chemical elements
  Cadmium
    Isotopes
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    Production
    Application
    Physical Properties
    Chemical Properties
    PDB 1a4k-1exq
      1a4k
      1a5z
      1aaz
      1aew
      1aiz
      1aqb
      1aw6
      1aw9
      1axs
      1bhq
      1c1j
      1c47
      1c6r
      1ca1
      1cdp
      1cf8
      1cfz
      1cld
      1con
      1crb
      1cvm
      1cyi
      1cyj
      1d5b
      1d5i
      1d66
      1d6v
      1d7b
      1d7c
      1d7d
      1dat
      1dcd
      1dfs
      1dft
      1dl5
      1dmc
      1dmd
      1dme
      1dmf
      1dpe
      1ds8
      1dv3
      1dyp
      1ee3
      1ell
      1elm
      1esf
      1et7
      1eu1
      1exq
    PDB 1f48-1ihu
    PDB 1ii0-1mhu
    PDB 1mms-1qvg
    PDB 1qy0-1wb6
    PDB 1wje-2avp
    PDB 2b3p-2j6e
    PDB 2jdz-2x05
    PDB 2x09-3ccj
    PDB 3ccl-3ggf
    PDB 3h1u-3p5v
    PDB 3p5w-8ice

Cadmium in the structure of The Three-Dimensional Solution Structure of Callinectes Sapidus Metallothionein-I Determined By Homonuclear and Heteronuclear Magnetic Resonance Spectoscopy (pdb 1dmf)






The binding sites of Cadmium atom in the structure of The Three-Dimensional Solution Structure of Callinectes Sapidus Metallothionein-I Determined By Homonuclear and Heteronuclear Magnetic Resonance Spectoscopy (pdb code 1dmf). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom.
The 1dmf structure was solved by S.S.NARULA, M.BROUWER, Y.HUA, I.M.ARMITAGE, with NMR in Solution technique.


Cadmium Binding Sites:

Cadmium binding site 1 out of 3 in 1dmf


Cadmium binding site 1 out of 3 in 1dmf
Click to enlarge
stereopicture of Cadmium binding site 1 out of 3 in 1dmf
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 1dmf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Cys4, A: Cys5, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Gly19, A: Cys20, A: Gln21, A: Cys22, A: Cys25, A: Cys27, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Asn6, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Cys20, A: Cys22, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Cys20, A: Cys22, A: Cys25, A: Cys27, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Asn6, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Cys20, A: Cys22, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Cys20, A: Gln21, A: Cys22, A: Cys25, A: Cys27, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Asn6, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys22, A: Cys25, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Cys20, A: Gln21, A: Cys22, A: Cys25, A: Cys27, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Cys20, A: Gln21, A: Cys22, A: Cys25, A: Cys27, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Cys20, A: Gln21, A: Cys22, A: Cys25, A: Cys27, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Cys20, A: Gln21, A: Cys22, A: Cys25, A: Cys27, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Cys20, A: Gln21, A: Cys22, A: Cys25, A: Cys27, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys16, A: Lys17, A: Cys20, A: Gln21, A: Cys22, A: Cys25, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys22, A: Cys25, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys22, A: Cys25, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Gly15, A: Cys16, A: Lys17, A: Cys20, A: Cys22, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys16, A: Lys17, A: Cys20, A: Gln21, A: Cys22, A: Cys25, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Cys20, A: Gln21, A: Cys22, A: Cys25, A: Cys27, A: Cd104, A: Cd105, A: Cys4, A: Cys5, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Cys20, A: Gln21, A: Cys22, A: Cys25, A: Cys27, A: Cd104, A: Cd105,

conact list:


AtomAtomDistance (A)
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdO A:Gly194.90
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdH A:Gln214.73
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdSG A:Cys274.73
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdSG A:Cys274.73
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdH A:Gln214.73
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdSG A:Cys274.73
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdH A:Gln214.73
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdSG A:Cys274.73
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdH A:Gln214.73
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdSG A:Cys274.73
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdH A:Gln214.73
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdSG A:Cys274.73
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdH A:Gln214.73
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdSG A:Cys274.73
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdH A:Gln214.73
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdSG A:Cys274.73
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdH A:Gln214.73
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdH A:Gln214.73
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdH A:Gln214.73
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdSG A:Cys274.73
CdCD A:Cd1043.91
CdCD A:Cd1053.67
CdHB2 A:Cys43.20
CdCB A:Cys43.50
CdHB3 A:Cys44.23
CdSG A:Cys42.51
CdH A:Cys44.63
CdC A:Cys44.31
CdCA A:Cys44.49
CdHB2 A:Cys53.40
CdN A:Cys53.59
CdCB A:Cys53.53
CdHB3 A:Cys54.45
CdHA A:Cys54.54
CdSG A:Cys52.48
CdH A:Cys53.07
CdCA A:Cys54.14
CdHA A:Cys94.71
CdCG2 A:Val104.49
CdHG21 A:Val103.66
CdHG22 A:Val104.80
CdHG23 A:Val104.45
CdH A:Val104.23
CdHB2 A:Cys114.92
CdHB2 A:Cys164.46
CdCB A:Cys163.51
CdHB3 A:Cys163.44
CdHA A:Cys163.43
CdSG A:Cys162.47
CdC A:Cys164.83
CdCA A:Cys164.00
CdN A:Lys174.53
CdHG3 A:Lys174.88
CdH A:Lys173.68
CdHB2 A:Cys203.56
CdN A:Cys204.66
CdCB A:Cys203.51
CdHB3 A:Cys204.50
CdHA A:Cys203.02
CdSG A:Cys202.52
CdC A:Cys204.85
CdCA A:Cys203.76
CdH A:Gln214.73
CdCB A:Cys224.87
CdHB3 A:Cys223.84
CdH A:Cys224.74
CdSG A:Cys254.20
CdSG A:Cys274.73
CdCD A:Cd1043.91
CdCD A:Cd1053.67

interactive model:


Cadmium binding site 2 out of 3 in 1dmf


Cadmium binding site 2 out of 3 in 1dmf
Click to enlarge
stereopicture of Cadmium binding site 2 out of 3 in 1dmf
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cadmium in the PDB 1dmf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Cys5, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys22, A: Ser24, A: Cys25, A: Cd103, A: Cd105, A: Cys4, A: Cys5, A: Val10, A: Cys11, A: Cys16, A: Lys17, A: Cys20, A: Cys25, A: Cys27, A: Cd103, A: Cd105, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Cys22, A: Cys25, A: Cd103, A: Cd105, A: Pro3, A: Cys4, A: Cys5, A: Asn6, A: Gly19, A: Cys20, A: Gln21, A: Cys22, A: Cd103, A: Pro3, A: Cys4, A: Cys5, A: Lys8, A: Val10, A: Gly15, A: Cys16, A: Lys17, A: Gly19, A: Cd103, A: Cys4, A: Cys5, A: Val10, A: Cys11, A: Gly15, A: Cys16, A: Lys17, A: Cys20, A: Cys25, A: Cys27, A: Cd103, A: Cd105, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys22, A: Ser24, A: Cys25, A: Cd103, A: Cd105, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Gln12, A: Cys16, A: Cys22, A: Ser24, A: Cys25, A: Cd103, A: Cd105, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys22, A: Ser24, A: Cys25, A: Cd103, A: Cd105, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Cys22, A: Ser24, A: Cys25, A: Cd103, A: Cd105, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Cys22, A: Ser24, A: Cys25, A: Cd103, A: Cd105, A: Pro3, A: Cys4, A: Cys5, A: Val10, A: Cys16, A: Lys17, A: Ala18, A: Gly19, A: Cys20, A: Gln21, A: Cd103, A: Cys4, A: Cys5, A: Val10, A: Cys11, A: Gly14, A: Gly15, A: Cys16, A: Lys17, A: Cd103, A: Cd105, A: Cys4, A: Cys5, A: Val10, A: Cys11, A: Gly15, A: Cys16, A: Lys17, A: Cys20, A: Cys25, A: Cys27, A: Cd103, A: Cd105, A: Pro3, A: Cys4, A: Cys5, A: Asn6, A: Asp7, A: Lys8, A: Cys9, A: Cys20, A: Gln21, A: Cys22, A: Cd103, A: Pro3, A: Cys4, A: Cys5, A: Cys16, A: Lys17, A: Ala18, A: Gly19, A: Cys20, A: Gln21, A: Cd103, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Cys16, A: Cys22, A: Ser24, A: Cys25, A: Cd103, A: Cd105, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Gln12, A: Cys16, A: Cys22, A: Ser24, A: Cys25, A: Cd103, A: Cd105,

conact list:


AtomAtomDistance (A)
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdHB2 A:Cys93.84
CdN A:Cys94.90
CdCB A:Cys93.63
CdHB3 A:Cys94.59
CdHA A:Cys92.91
CdSG A:Cys92.54
CdC A:Cys94.48
CdCA A:Cys93.70
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdSG A:Cys204.25
CdHB2 A:Cys223.81
CdCB A:Cys223.39
CdHB3 A:Cys223.12
CdSG A:Cys222.50
CdC A:Cys224.91
CdCA A:Cys224.72
CdO A:Ser244.76
CdHB2 A:Ser244.48
CdN A:Ser244.55
CdCB A:Ser244.89
CdHB3 A:Ser244.63
CdH A:Ser243.74
CdC A:Ser244.38
CdCA A:Ser244.88
CdHB2 A:Cys254.16
CdN A:Cys254.13
CdCB A:Cys253.38
CdHB3 A:Cys253.01
CdSG A:Cys252.57
CdH A:Cys254.26
CdCA A:Cys254.36
CdCD A:Cd1033.91
CdCD A:Cd1054.32
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdSG A:Cys204.25
CdHB2 A:Cys254.16
CdN A:Cys254.13
CdCB A:Cys253.38
CdHB3 A:Cys253.01
CdSG A:Cys252.57
CdH A:Cys254.26
CdCA A:Cys254.36
CdCD A:Cd1033.91
CdCD A:Cd1054.32
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdHB2 A:Cys93.84
CdN A:Cys94.90
CdCB A:Cys93.63
CdHB3 A:Cys94.59
CdHA A:Cys92.91
CdSG A:Cys92.54
CdC A:Cys94.48
CdCA A:Cys93.70
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdHB2 A:Cys223.81
CdCB A:Cys223.39
CdHB3 A:Cys223.12
CdSG A:Cys222.50
CdC A:Cys224.91
CdCA A:Cys224.72
CdHB2 A:Cys254.16
CdN A:Cys254.13
CdCB A:Cys253.38
CdHB3 A:Cys253.01
CdSG A:Cys252.57
CdH A:Cys254.26
CdCA A:Cys254.36
CdCD A:Cd1033.91
CdCD A:Cd1054.32
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdSG A:Cys204.25
CdHB2 A:Cys223.81
CdCB A:Cys223.39
CdHB3 A:Cys223.12
CdSG A:Cys222.50
CdC A:Cys224.91
CdCA A:Cys224.72
CdCD A:Cd1033.91
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdN A:Val104.53
CdH A:Val104.03
CdSG A:Cys164.49
CdCD A:Cd1033.91
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdSG A:Cys204.25
CdHB2 A:Cys254.16
CdN A:Cys254.13
CdCB A:Cys253.38
CdHB3 A:Cys253.01
CdSG A:Cys252.57
CdH A:Cys254.26
CdCA A:Cys254.36
CdCD A:Cd1033.91
CdCD A:Cd1054.32
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdHB2 A:Cys93.84
CdN A:Cys94.90
CdCB A:Cys93.63
CdHB3 A:Cys94.59
CdHA A:Cys92.91
CdSG A:Cys92.54
CdC A:Cys94.48
CdCA A:Cys93.70
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdSG A:Cys204.25
CdHB2 A:Cys223.81
CdCB A:Cys223.39
CdHB3 A:Cys223.12
CdSG A:Cys222.50
CdC A:Cys224.91
CdCA A:Cys224.72
CdO A:Ser244.76
CdHB2 A:Ser244.48
CdN A:Ser244.55
CdCB A:Ser244.89
CdHB3 A:Ser244.63
CdH A:Ser243.74
CdC A:Ser244.38
CdCA A:Ser244.88
CdHB2 A:Cys254.16
CdN A:Cys254.13
CdCB A:Cys253.38
CdHB3 A:Cys253.01
CdSG A:Cys252.57
CdH A:Cys254.26
CdCA A:Cys254.36
CdCD A:Cd1033.91
CdCD A:Cd1054.32
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdHB2 A:Cys93.84
CdN A:Cys94.90
CdCB A:Cys93.63
CdHB3 A:Cys94.59
CdHA A:Cys92.91
CdSG A:Cys92.54
CdC A:Cys94.48
CdCA A:Cys93.70
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdHB2 A:Cys223.81
CdCB A:Cys223.39
CdHB3 A:Cys223.12
CdSG A:Cys222.50
CdC A:Cys224.91
CdCA A:Cys224.72
CdO A:Ser244.76
CdHB2 A:Ser244.48
CdN A:Ser244.55
CdCB A:Ser244.89
CdHB3 A:Ser244.63
CdH A:Ser243.74
CdC A:Ser244.38
CdCA A:Ser244.88
CdHB2 A:Cys254.16
CdN A:Cys254.13
CdCB A:Cys253.38
CdHB3 A:Cys253.01
CdSG A:Cys252.57
CdH A:Cys254.26
CdCA A:Cys254.36
CdCD A:Cd1033.91
CdCD A:Cd1054.32
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdHB2 A:Cys93.84
CdN A:Cys94.90
CdCB A:Cys93.63
CdHB3 A:Cys94.59
CdHA A:Cys92.91
CdSG A:Cys92.54
CdC A:Cys94.48
CdCA A:Cys93.70
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdSG A:Cys204.25
CdHB2 A:Cys223.81
CdCB A:Cys223.39
CdHB3 A:Cys223.12
CdSG A:Cys222.50
CdC A:Cys224.91
CdCA A:Cys224.72
CdO A:Ser244.76
CdHB2 A:Ser244.48
CdN A:Ser244.55
CdCB A:Ser244.89
CdHB3 A:Ser244.63
CdH A:Ser243.74
CdC A:Ser244.38
CdCA A:Ser244.88
CdHB2 A:Cys254.16
CdN A:Cys254.13
CdCB A:Cys253.38
CdHB3 A:Cys253.01
CdSG A:Cys252.57
CdH A:Cys254.26
CdCA A:Cys254.36
CdCD A:Cd1033.91
CdCD A:Cd1054.32
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdHB2 A:Cys93.84
CdN A:Cys94.90
CdCB A:Cys93.63
CdHB3 A:Cys94.59
CdHA A:Cys92.91
CdSG A:Cys92.54
CdC A:Cys94.48
CdCA A:Cys93.70
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdHB2 A:Cys223.81
CdCB A:Cys223.39
CdHB3 A:Cys223.12
CdSG A:Cys222.50
CdC A:Cys224.91
CdCA A:Cys224.72
CdO A:Ser244.76
CdHB2 A:Ser244.48
CdN A:Ser244.55
CdCB A:Ser244.89
CdHB3 A:Ser244.63
CdH A:Ser243.74
CdC A:Ser244.38
CdCA A:Ser244.88
CdHB2 A:Cys254.16
CdN A:Cys254.13
CdCB A:Cys253.38
CdHB3 A:Cys253.01
CdSG A:Cys252.57
CdH A:Cys254.26
CdCA A:Cys254.36
CdCD A:Cd1033.91
CdCD A:Cd1054.32
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdHB2 A:Cys93.84
CdN A:Cys94.90
CdCB A:Cys93.63
CdHB3 A:Cys94.59
CdHA A:Cys92.91
CdSG A:Cys92.54
CdC A:Cys94.48
CdCA A:Cys93.70
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdHB2 A:Cys223.81
CdCB A:Cys223.39
CdHB3 A:Cys223.12
CdSG A:Cys222.50
CdC A:Cys224.91
CdCA A:Cys224.72
CdO A:Ser244.76
CdHB2 A:Ser244.48
CdN A:Ser244.55
CdCB A:Ser244.89
CdHB3 A:Ser244.63
CdH A:Ser243.74
CdC A:Ser244.38
CdCA A:Ser244.88
CdHB2 A:Cys254.16
CdN A:Cys254.13
CdCB A:Cys253.38
CdHB3 A:Cys253.01
CdSG A:Cys252.57
CdH A:Cys254.26
CdCA A:Cys254.36
CdCD A:Cd1033.91
CdCD A:Cd1054.32
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdN A:Val104.53
CdH A:Val104.03
CdSG A:Cys164.49
CdSG A:Cys204.25
CdCD A:Cd1033.91
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdCD A:Cd1033.91
CdCD A:Cd1054.32
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdSG A:Cys204.25
CdHB2 A:Cys254.16
CdN A:Cys254.13
CdCB A:Cys253.38
CdHB3 A:Cys253.01
CdSG A:Cys252.57
CdH A:Cys254.26
CdCA A:Cys254.36
CdCD A:Cd1033.91
CdCD A:Cd1054.32
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdHB2 A:Cys93.84
CdN A:Cys94.90
CdCB A:Cys93.63
CdHB3 A:Cys94.59
CdHA A:Cys92.91
CdSG A:Cys92.54
CdC A:Cys94.48
CdCA A:Cys93.70
CdSG A:Cys204.25
CdHB2 A:Cys223.81
CdCB A:Cys223.39
CdHB3 A:Cys223.12
CdSG A:Cys222.50
CdC A:Cys224.91
CdCA A:Cys224.72
CdCD A:Cd1033.91
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdSG A:Cys164.49
CdSG A:Cys204.25
CdCD A:Cd1033.91
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdHB2 A:Cys93.84
CdN A:Cys94.90
CdCB A:Cys93.63
CdHB3 A:Cys94.59
CdHA A:Cys92.91
CdSG A:Cys92.54
CdC A:Cys94.48
CdCA A:Cys93.70
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdHB2 A:Cys223.81
CdCB A:Cys223.39
CdHB3 A:Cys223.12
CdSG A:Cys222.50
CdC A:Cys224.91
CdCA A:Cys224.72
CdO A:Ser244.76
CdHB2 A:Ser244.48
CdN A:Ser244.55
CdCB A:Ser244.89
CdHB3 A:Ser244.63
CdH A:Ser243.74
CdC A:Ser244.38
CdCA A:Ser244.88
CdHB2 A:Cys254.16
CdN A:Cys254.13
CdCB A:Cys253.38
CdHB3 A:Cys253.01
CdSG A:Cys252.57
CdH A:Cys254.26
CdCA A:Cys254.36
CdCD A:Cd1033.91
CdCD A:Cd1054.32
CdHB2 A:Cys53.94
CdCB A:Cys53.63
CdHB3 A:Cys53.55
CdSG A:Cys52.53
CdCA A:Cys54.96
CdHB2 A:Cys93.84
CdN A:Cys94.90
CdCB A:Cys93.63
CdHB3 A:Cys94.59
CdHA A:Cys92.91
CdSG A:Cys92.54
CdC A:Cys94.48
CdCA A:Cys93.70
CdN A:Val104.53
CdH A:Val104.03
CdHB2 A:Cys113.58
CdN A:Cys114.94
CdCB A:Cys114.65
CdHB3 A:Cys114.95
CdH A:Cys114.24
CdSG A:Cys164.49
CdHB2 A:Cys223.81
CdCB A:Cys223.39
CdHB3 A:Cys223.12
CdSG A:Cys222.50
CdC A:Cys224.91
CdCA A:Cys224.72
CdO A:Ser244.76
CdHB2 A:Ser244.48
CdN A:Ser244.55
CdCB A:Ser244.89
CdHB3 A:Ser244.63
CdH A:Ser243.74
CdC A:Ser244.38
CdCA A:Ser244.88
CdHB2 A:Cys254.16
CdN A:Cys254.13
CdCB A:Cys253.38
CdHB3 A:Cys253.01
CdSG A:Cys252.57
CdH A:Cys254.26
CdCA A:Cys254.36
CdCD A:Cd1033.91
CdCD A:Cd1054.32

interactive model:


Cadmium binding site 3 out of 3 in 1dmf


Cadmium binding site 3 out of 3 in 1dmf
Click to enlarge
stereopicture of Cadmium binding site 3 out of 3 in 1dmf
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Cadmium in the PDB 1dmf. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Cys5, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys25, A: Cys27, A: Cd103, A: Cd104, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Gln12, A: Cys16, A: Cys25, A: Cd104, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys25, A: Arg26, A: Cys27, A: Cd103, A: Cd104, A: Pro3, A: Cys4, A: Cys5, A: Asn6, A: Asp7, A: Lys8, A: Val10, A: Gly15, A: Cys16, A: Lys17, A: Pro3, A: Cys4, A: Cys5, A: Lys17, A: Gly19, A: Cys20, A: Gln21, A: Cys22, A: Cd103, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Gln12, A: Cys16, A: Cys22, A: Cys25, A: Cd103, A: Cd104, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys25, A: Arg26, A: Cys27, A: Cd103, A: Cd104, A: Cys5, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys25, A: Arg26, A: Cys27, A: Cd103, A: Cd104, A: Cys5, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys25, A: Arg26, A: Cys27, A: Cd103, A: Cd104, A: Cys5, A: Val10, A: Cys11, A: Gln12, A: Cys16, A: Cys20, A: Cys25, A: Arg26, A: Cys27, A: Cd103, A: Cd104, A: Cys5, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys25, A: Arg26, A: Cys27, A: Cd103, A: Cd104, A: Pro3, A: Cys4, A: Cys5, A: Asn6, A: Gly19, A: Cys20, A: Gln21, A: Cys22, A: Cd103, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Gln12, A: Cys16, A: Cys25, A: Cd104, A: Cys5, A: Lys8, A: Cys9, A: Val10, A: Cys11, A: Gln12, A: Cys16, A: Cys25, A: Cd103, A: Cd104, A: Pro3, A: Cys4, A: Cys5, A: Asn6, A: Lys8, A: Val10, A: Gly15, A: Cys16, A: Lys17, A: Gly19, A: Cys20, A: Cd103, A: Pro3, A: Cys4, A: Cys5, A: Asn6, A: Gly19, A: Cys20, A: Gln21, A: Cys22, A: Cd103, A: Cys5, A: Val10, A: Cys11, A: Cys16, A: Cys20, A: Cys25, A: Arg26, A: Cys27, A: Cd103, A: Cd104, A: Cys5, A: Cys11, A: Cys16, A: Cys20, A: Cys22, A: Cys25, A: Arg26, A: Cys27, A: Cd103, A: Cd104,

conact list:


AtomAtomDistance (A)
CdSG A:Cys54.89
CdHG21 A:Val104.90
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdHB2 A:Cys273.49
CdN A:Cys274.31
CdCB A:Cys273.49
CdHB3 A:Cys274.48
CdHA A:Cys273.23
CdSG A:Cys272.54
CdH A:Cys274.22
CdCA A:Cys273.80
CdCD A:Cd1033.67
CdCD A:Cd1044.32
CdSG A:Cys54.89
CdHG21 A:Val104.90
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdCD A:Cd1044.32
CdHG21 A:Val104.90
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdHB2 A:Cys273.49
CdN A:Cys274.31
CdCB A:Cys273.49
CdHB3 A:Cys274.48
CdHA A:Cys273.23
CdSG A:Cys272.54
CdH A:Cys274.22
CdCA A:Cys273.80
CdCD A:Cd1033.67
CdCD A:Cd1044.32
CdSG A:Cys54.89
CdHG21 A:Val104.90
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdSG A:Cys54.89
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdCD A:Cd1033.67
CdSG A:Cys54.89
CdHG21 A:Val104.90
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdCD A:Cd1033.67
CdCD A:Cd1044.32
CdHG21 A:Val104.90
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdHB2 A:Cys273.49
CdN A:Cys274.31
CdCB A:Cys273.49
CdHB3 A:Cys274.48
CdHA A:Cys273.23
CdSG A:Cys272.54
CdH A:Cys274.22
CdCA A:Cys273.80
CdCD A:Cd1033.67
CdCD A:Cd1044.32
CdSG A:Cys54.89
CdHG21 A:Val104.90
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdHB2 A:Cys273.49
CdN A:Cys274.31
CdCB A:Cys273.49
CdHB3 A:Cys274.48
CdHA A:Cys273.23
CdSG A:Cys272.54
CdH A:Cys274.22
CdCA A:Cys273.80
CdCD A:Cd1033.67
CdCD A:Cd1044.32
CdSG A:Cys54.89
CdHG21 A:Val104.90
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdHB2 A:Cys273.49
CdN A:Cys274.31
CdCB A:Cys273.49
CdHB3 A:Cys274.48
CdHA A:Cys273.23
CdSG A:Cys272.54
CdH A:Cys274.22
CdCA A:Cys273.80
CdCD A:Cd1033.67
CdCD A:Cd1044.32
CdSG A:Cys54.89
CdHG21 A:Val104.90
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdHB2 A:Cys273.49
CdN A:Cys274.31
CdCB A:Cys273.49
CdHB3 A:Cys274.48
CdHA A:Cys273.23
CdSG A:Cys272.54
CdH A:Cys274.22
CdCA A:Cys273.80
CdCD A:Cd1033.67
CdCD A:Cd1044.32
CdSG A:Cys54.89
CdHG21 A:Val104.90
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdHB2 A:Cys273.49
CdN A:Cys274.31
CdCB A:Cys273.49
CdHB3 A:Cys274.48
CdHA A:Cys273.23
CdSG A:Cys272.54
CdH A:Cys274.22
CdCA A:Cys273.80
CdCD A:Cd1033.67
CdCD A:Cd1044.32
CdSG A:Cys54.89
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdCD A:Cd1033.67
CdSG A:Cys54.89
CdHG21 A:Val104.90
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdCD A:Cd1044.32
CdSG A:Cys54.89
CdHG21 A:Val104.90
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdCD A:Cd1033.67
CdCD A:Cd1044.32
CdSG A:Cys54.89
CdHG21 A:Val104.90
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdCD A:Cd1033.67
CdSG A:Cys54.89
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdCD A:Cd1033.67
CdSG A:Cys54.89
CdHG21 A:Val104.90
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdHB2 A:Cys273.49
CdN A:Cys274.31
CdCB A:Cys273.49
CdHB3 A:Cys274.48
CdHA A:Cys273.23
CdSG A:Cys272.54
CdH A:Cys274.22
CdCA A:Cys273.80
CdCD A:Cd1033.67
CdCD A:Cd1044.32
CdSG A:Cys54.89
CdHB2 A:Cys112.78
CdN A:Cys114.44
CdCB A:Cys113.17
CdHB3 A:Cys114.04
CdHA A:Cys113.69
CdSG A:Cys112.49
CdH A:Cys114.59
CdCA A:Cys113.95
CdHB2 A:Cys163.81
CdCB A:Cys163.71
CdHB3 A:Cys163.88
CdSG A:Cys162.52
CdHB2 A:Cys204.68
CdCB A:Cys204.85
CdSG A:Cys203.59
CdO A:Cys254.53
CdHB2 A:Cys253.16
CdCB A:Cys253.49
CdHB3 A:Cys254.06
CdSG A:Cys252.59
CdC A:Cys254.71
CdCA A:Cys254.72
CdHB2 A:Cys273.49
CdN A:Cys274.31
CdCB A:Cys273.49
CdHB3 A:Cys274.48
CdHA A:Cys273.23
CdSG A:Cys272.54
CdH A:Cys274.22
CdCA A:Cys273.80
CdCD A:Cd1033.67
CdCD A:Cd1044.32

interactive model:




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