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Cadmium in PDB 1fy2: Aspartyl Dipeptidase

Protein crystallography data

The structure of Aspartyl Dipeptidase, PDB code: 1fy2 was solved by K.Hakansson, A.H.-J.Wang, C.G.Miller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 500.00 / 1.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 91.986, 42.690, 62.496, 90.00, 106.06, 90.00
R / Rfree (%) 21.8 / 23

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Aspartyl Dipeptidase (pdb code 1fy2). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Aspartyl Dipeptidase, PDB code: 1fy2:

Cadmium binding site 1 out of 1 in 1fy2

Go back to Cadmium Binding Sites List in 1fy2
Cadmium binding site 1 out of 1 in the Aspartyl Dipeptidase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Aspartyl Dipeptidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1001

b:13.7
occ:1.00
ND1 A:HIS227 2.2 12.5 1.0
O A:HOH1110 2.5 19.2 1.0
O A:HOH1068 2.5 17.1 1.0
OE1 A:GLU224 2.6 17.5 1.0
OE2 A:GLU224 2.6 17.6 1.0
CD A:GLU224 2.9 17.6 1.0
CE1 A:HIS227 3.1 13.4 1.0
CG A:HIS227 3.4 13.0 1.0
CB A:HIS227 3.8 13.3 1.0
O A:HOH1119 4.1 24.4 1.0
NE2 A:HIS227 4.2 14.7 1.0
O A:HOH1069 4.3 21.5 1.0
CA A:HIS227 4.4 12.5 1.0
CD2 A:HIS227 4.4 14.4 1.0
CG A:GLU224 4.5 14.2 1.0
O A:HOH1053 4.5 15.5 1.0
O A:HOH1173 4.7 23.8 1.0
CD2 A:LEU223 4.8 16.6 1.0
N A:GLU224 4.8 16.1 1.0

Reference:

K.Hakansson, A.H.Wang, C.G.Miller. The Structure of Aspartyl Dipeptidase Reveals A Unique Fold with A Ser-His-Glu Catalytic Triad. Proc.Natl.Acad.Sci.Usa V. 97 14097 2000.
ISSN: ISSN 0027-8424
PubMed: 11106384
DOI: 10.1073/PNAS.260376797
Page generated: Wed Oct 28 09:53:13 2020
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