Chemical elements
    Physical Properties
    Chemical Properties
    PDB 1a4k-1exq
    PDB 1f48-1ihu
    PDB 1ii0-1mhu
    PDB 1mms-1qvg
    PDB 1qy0-1wb6
    PDB 1wje-2avp
    PDB 2b3p-2j6e
    PDB 2jdz-2x05
    PDB 2x09-3ccj
    PDB 3ccl-3ggf
    PDB 3h1u-3p5v
    PDB 3p5w-8ice

Cadmium in the structure of Cd-CYS102SER Dtxr (pdb 1g3w)

The binding sites of Cadmium atom in the structure of Cd-CYS102SER Dtxr (pdb code 1g3w). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom.
The 1g3w structure was solved by E.POHL, J.GORANSON-SIEKIERKE, R.K.HOLMES, W.G.J.HOL, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)8.0-2.4
Space groupP3121
a (A)63.500
b (A)63.500
c (A)110.000
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)18
Rfree (%)25.9

Cadmium Binding Sites:

Cadmium binding site 1 out of 1 in 1g3w

Cadmium binding site 1 out of 1 in 1g3w
Click to enlarge
stereopicture of Cadmium binding site 1 out of 1 in 1g3w
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 1g3w. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His79, A: Glu83, A: His98, A: Phe128, A: So4303, A: Hoh452, A: Hoh469,

conact list:

AtomAtomDistance (A)
CdNE2 A:His792.47
CdND1 A:His794.61
CdCD2 A:His793.44
CdCE1 A:His793.46
CdCG A:His794.59
CdOE1 A:Glu833.38
CdOE2 A:Glu832.27
CdCD A:Glu833.13
CdCG A:Glu834.43
CdO A:His984.84
CdNE2 A:His984.21
CdCB A:His984.18
CdND1 A:His982.33
CdCD2 A:His984.54
CdCE1 A:His982.93
CdCG A:His983.59
CdCA A:His984.39
CdCE2 A:Phe1284.62
CdCD2 A:Phe1284.54
CdS A:So43032.67
CdO1 A:So43033.91
CdO2 A:So43032.53
CdO4 A:So43033.56
CdO3 A:So43031.88
CdO A:Hoh4524.24
CdO A:Hoh4692.43

interactive model:

© Copyright 2008-2012 by