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Cadmium in PDB 1g3w: Cd-CYS102SER Dtxr

Protein crystallography data

The structure of Cd-CYS102SER Dtxr, PDB code: 1g3w was solved by E.Pohl, J.Goranson-Siekierke, R.K.Holmes, W.G.J.Hol, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.40
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 63.500, 63.500, 110.000, 90.00, 90.00, 120.00
R / Rfree (%) 18 / 25.9

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Cd-CYS102SER Dtxr (pdb code 1g3w). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Cd-CYS102SER Dtxr, PDB code: 1g3w:

Cadmium binding site 1 out of 1 in 1g3w

Go back to Cadmium Binding Sites List in 1g3w
Cadmium binding site 1 out of 1 in the Cd-CYS102SER Dtxr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Cd-CYS102SER Dtxr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd290

b:40.7
occ:1.00
O3 A:SO4303 1.9 45.7 0.5
OE2 A:GLU83 2.3 27.8 1.0
ND1 A:HIS98 2.3 32.1 1.0
O A:HOH469 2.4 69.5 1.0
NE2 A:HIS79 2.5 27.6 1.0
O2 A:SO4303 2.5 40.5 0.5
S A:SO4303 2.7 45.6 0.5
CE1 A:HIS98 2.9 28.5 1.0
CD A:GLU83 3.1 22.9 1.0
OE1 A:GLU83 3.4 25.1 1.0
CD2 A:HIS79 3.4 25.8 1.0
CE1 A:HIS79 3.5 27.1 1.0
O4 A:SO4303 3.6 46.0 0.5
CG A:HIS98 3.6 30.6 1.0
O1 A:SO4303 3.9 45.4 0.5
CB A:HIS98 4.2 32.2 1.0
NE2 A:HIS98 4.2 29.7 1.0
O A:HOH452 4.2 44.2 1.0
CA A:HIS98 4.4 28.4 1.0
CG A:GLU83 4.4 22.4 1.0
CD2 A:HIS98 4.5 27.9 1.0
CD2 A:PHE128 4.5 22.3 1.0
CG A:HIS79 4.6 20.2 1.0
ND1 A:HIS79 4.6 26.6 1.0
CE2 A:PHE128 4.6 24.0 1.0
O A:HIS98 4.8 33.0 1.0

Reference:

E.Pohl, J.Goranson-Siekierke, M.K.Choi, T.Roosild, R.K.Holmes, W.G.Hol. Structures of Three Diphtheria Toxin Repressor (Dtxr) Variants with Decreased Repressor Activity. Acta Crystallogr.,Sect.D V. 57 619 2001.
ISSN: ISSN 0907-4449
PubMed: 11320302
DOI: 10.1107/S090744490100230X
Page generated: Fri Aug 28 11:51:25 2020
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