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Cadmium in PDB 1gm6: 3-D Structure of A Salivary Lipocalin From Boar

Protein crystallography data

The structure of 3-D Structure of A Salivary Lipocalin From Boar, PDB code: 1gm6 was solved by S.Spinelli, F.Vincent, P.Pelosi, M.Tegoni, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.53 / 2.13
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 70.112, 70.112, 71.750, 90.00, 90.00, 90.00
R / Rfree (%) 25.4 / 28.2

Cadmium Binding Sites:

The binding sites of Cadmium atom in the 3-D Structure of A Salivary Lipocalin From Boar (pdb code 1gm6). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the 3-D Structure of A Salivary Lipocalin From Boar, PDB code: 1gm6:

Cadmium binding site 1 out of 1 in 1gm6

Go back to Cadmium Binding Sites List in 1gm6
Cadmium binding site 1 out of 1 in the 3-D Structure of A Salivary Lipocalin From Boar


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of 3-D Structure of A Salivary Lipocalin From Boar within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1166

b:34.8
occ:0.55
OE2 A:GLU21 2.1 51.1 1.0
CD A:GLU21 2.8 47.3 1.0
OE1 A:GLU21 2.8 51.2 1.0
OE1 A:GLU46 2.9 36.3 1.0
ND1 A:HIS47 3.0 42.4 1.0
CB A:HIS47 3.4 36.1 1.0
CG A:HIS47 3.5 40.2 1.0
CG A:GLU46 3.5 31.8 1.0
CD A:GLU46 3.6 33.8 1.0
CE1 A:HIS47 4.0 41.6 0.5
N A:SER166 4.2 44.6 0.5
CG A:GLU21 4.2 45.4 1.0
N A:HIS47 4.5 31.6 1.0
O A:HOH2107 4.5 75.0 1.0
CA A:HIS47 4.5 34.9 1.0
N A:GLY165 4.6 42.0 1.0
CD2 A:HIS47 4.6 41.5 1.0
CA A:GLY165 4.7 42.9 1.0
C A:GLU46 4.8 28.8 1.0
OE2 A:GLU46 4.8 31.7 1.0
CB A:GLU46 4.8 28.9 1.0
NE2 A:HIS47 4.8 42.4 0.5
O A:GLU46 4.9 26.7 1.0
C A:GLY165 5.0 43.9 0.7

Reference:

S.Spinelli, F.Vincent, P.Pelosi, M.Tegoni, C.Cambillau. Boar Salivary Lipocalin. Three-Dimensional X-Ray Structure and Androsterol/Androstenone Docking Simulations. Eur.J.Biochem. V. 269 2449 2002.
ISSN: ISSN 0014-2956
PubMed: 12027882
DOI: 10.1046/J.1432-1033.2002.02901.X
Page generated: Fri Aug 28 11:53:45 2020
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