Atomistry » Cadmium » PDB 1dpe-1gwg » 1gwg
Atomistry »
  Cadmium »
    PDB 1dpe-1gwg »
      1gwg »

Cadmium in PDB 1gwg: Tri-Iodide Derivative of Apoferritin

Protein crystallography data

The structure of Tri-Iodide Derivative of Apoferritin, PDB code: 1gwg was solved by G.Evans, G.Bricogne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.14 / 2.01
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 181.190, 181.190, 181.190, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 20.8

Other elements in 1gwg:

The structure of Tri-Iodide Derivative of Apoferritin also contains other interesting chemical elements:

Iodine (I) 9 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Tri-Iodide Derivative of Apoferritin (pdb code 1gwg). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Tri-Iodide Derivative of Apoferritin, PDB code: 1gwg:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 1gwg

Go back to Cadmium Binding Sites List in 1gwg
Cadmium binding site 1 out of 2 in the Tri-Iodide Derivative of Apoferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Tri-Iodide Derivative of Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1178

b:19.1
occ:0.50
OD2 A:ASP80 2.5 20.1 1.0
OD1 A:ASP80 2.6 13.0 1.0
I A:IOD1180 2.8 22.1 0.6
CG A:ASP80 2.9 15.3 1.0
O A:HOH2081 4.4 14.9 1.0
CB A:ASP80 4.4 11.8 1.0
O A:HOH2084 4.6 1.0 0.5

Cadmium binding site 2 out of 2 in 1gwg

Go back to Cadmium Binding Sites List in 1gwg
Cadmium binding site 2 out of 2 in the Tri-Iodide Derivative of Apoferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Tri-Iodide Derivative of Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1179

b:29.1
occ:0.17
OE1 A:GLU130 2.5 43.9 1.0
O A:HOH2127 2.6 25.4 1.0
O A:HOH2126 2.9 37.1 0.3
CD A:GLU130 3.4 48.2 1.0
O A:HOH2125 3.6 24.2 0.3
OE2 A:GLU130 3.6 46.8 1.0
CG A:GLU130 4.7 30.0 1.0
CB A:GLU130 4.9 27.3 1.0

Reference:

G.Evans, G.Bricogne. Triiodide Derivatization and Combinatorial Counter-Ion Replacement: Two Methods For Enhancing Phasing Signal Using Laboratory Cu Kalpha X-Ray Equipment Acta Crystallogr.,Sect.D V. 58 976 2002.
ISSN: ISSN 0907-4449
PubMed: 12037300
DOI: 10.1107/S0907444902005486
Page generated: Sun Jan 24 09:41:38 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy