Cadmium in PDB 1h96: Recombinant Mouse L-Chain Ferritin

The structure of Recombinant Mouse L-Chain Ferritin, PDB code: 1h96 was solved by T.Granier, B.Gallois, B.L.D'estaintot, A.Dautant, J.M.Chevalier, J.M.Mellado, C.Beaumont, P.Santambrogio, P.Arosio, G.Precigoux, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.00 / 1.60
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	180.820, 180.820, 180.820, 90.00, 90.00, 90.00
R / Rfree (%)	16 / 22

The binding sites of Cadmium atom in the Recombinant Mouse L-Chain Ferritin (pdb code 1h96). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 9 binding sites of Cadmium where determined in the Recombinant Mouse L-Chain Ferritin, PDB code: 1h96:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Cadmium binding site 1 out of 9 in the Recombinant Mouse L-Chain Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Recombinant Mouse L-Chain Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd487 b:15.4 occ:0.33 O A:HOH2234 1.8 15.9 0.7 O A:HOH2236 1.9 18.2 0.7 OD1 A:ASP127 2.7 21.2 1.0 OG A:SER131 3.6 18.3 1.0 CG A:ASP127 3.9 17.2 1.0 OE1 A:GLU130 4.2 7.2 0.3 O A:HOH2241 4.5 11.9 0.3 OD2 A:ASP127 4.7 20.8 1.0 CB A:ASP127 4.7 12.0 1.0 O A:HOH2245 4.8 32.5 0.5 OE1 A:GLU130 4.9 19.5 0.7 O A:ASP127 4.9 9.4 1.0 O A:HOH2244 5.0 14.6 0.7 CB A:SER131 5.0 15.2 1.0

Cadmium binding site 2 out of 9 in the Recombinant Mouse L-Chain Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Recombinant Mouse L-Chain Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd488 b:17.3 occ:0.33 O A:HOH2241 1.6 11.9 0.3 OE2 A:GLU130 2.1 14.7 0.3 O A:HOH2244 2.2 14.6 0.7 OE1 A:GLU130 2.3 19.5 0.7 O A:HOH2242 2.5 12.7 0.7 OE1 A:GLU130 2.5 7.2 0.3 CD A:GLU130 2.6 18.9 0.3 O A:HOH2239 2.6 12.0 0.3 OE2 A:GLU130 2.9 14.4 0.7 CD A:GLU130 3.0 20.5 0.7 O A:HOH2243 3.5 5.3 0.3 CG A:GLU130 4.1 18.2 0.3 CG A:GLU130 4.4 15.3 0.7 CD A:CD492 4.5 18.6 0.3 O A:HOH2236 4.6 18.2 0.7 O A:HOH2099 4.6 21.6 0.3

Cadmium binding site 3 out of 9 in the Recombinant Mouse L-Chain Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Recombinant Mouse L-Chain Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd489 b:12.9 occ:0.50 OD2 A:ASP80 2.1 18.5 1.0 OD1 A:ASP80 2.4 6.3 1.0 CG A:ASP80 2.6 10.9 1.0 CB A:ASP80 4.1 6.3 1.0 O A:HOH2161 4.2 13.2 1.0

Cadmium binding site 4 out of 9 in the Recombinant Mouse L-Chain Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Recombinant Mouse L-Chain Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd490 b:23.9 occ:0.40 CD A:CD494 1.4 27.4 0.3 OE2 A:GLU60 2.2 21.3 1.0 OE2 A:GLU56 2.3 35.4 1.0 O A:HOH2126 2.6 25.6 1.0 CD A:GLU60 2.8 16.0 1.0 OE1 A:GLU60 2.8 21.5 1.0 CD A:GLU56 3.3 30.4 1.0 CG A:GLU56 3.6 16.5 1.0 O A:HOH2122 4.1 30.2 1.0 O A:HOH2137 4.2 42.1 1.0 CG A:GLU60 4.3 10.8 1.0 OE1 A:GLU56 4.5 33.5 1.0 O A:HOH2125 4.6 35.7 1.0 OE1 A:GLU57 4.7 21.8 1.0 CB A:GLU56 4.8 9.2 1.0

Cadmium binding site 5 out of 9 in the Recombinant Mouse L-Chain Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Recombinant Mouse L-Chain Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd491 b:19.5 occ:0.50 O A:HOH2251 2.0 27.2 0.5 O A:HOH2248 2.1 16.5 0.5 O A:HOH2237 2.2 25.4 0.5 NE2 A:HIS132 2.3 11.3 1.0 O A:HOH2250 2.3 20.5 0.5 CE1 A:HIS132 3.1 17.0 1.0 O A:HOH2105 3.3 21.3 1.0 CD2 A:HIS132 3.4 10.2 1.0 O A:HOH2142 4.2 18.7 1.0 ND1 A:HIS132 4.3 14.5 1.0 O A:HOH2245 4.4 32.5 0.5 CG A:HIS132 4.4 10.7 1.0 CB A:SER131 4.7 15.2 1.0

Cadmium binding site 6 out of 9 in the Recombinant Mouse L-Chain Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Recombinant Mouse L-Chain Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd492 b:18.6 occ:0.33 O A:HOH2225 2.1 12.4 0.3 O A:HOH2242 2.2 12.7 0.7 O A:HOH2099 2.2 21.6 0.3 O A:HOH2243 2.4 5.3 0.3 NE2 A:HIS114 2.5 13.4 0.3 CE1 A:HIS114 2.6 9.9 0.7 O A:HOH2239 2.7 12.0 0.3 NE2 A:HIS114 2.8 15.4 0.7 CE1 A:HIS114 3.1 6.8 0.3 OE2 A:GLU130 3.2 14.4 0.7 CB A:CYS126 3.5 12.4 1.0 CD2 A:HIS114 3.7 7.9 0.3 O A:HOH2098 3.7 36.3 1.0 SG A:CYS126 3.7 14.9 1.0 ND1 A:HIS114 3.8 12.6 0.7 OG A:SER118 3.8 5.9 0.3 CD2 A:HIS114 4.1 14.6 0.7 ND1 A:HIS114 4.4 7.2 0.3 O A:HOH2226 4.4 36.9 0.3 CD A:GLU130 4.5 20.5 0.7 CD A:CD488 4.5 17.3 0.3 O A:HOH2244 4.5 14.6 0.7 CG A:HIS114 4.6 11.2 0.7 CG A:HIS114 4.6 9.7 0.3 CA A:CYS126 4.8 10.1 1.0 OE2 A:GLU130 4.9 14.7 0.3 OG A:SER118 5.0 20.6 0.7

Cadmium binding site 7 out of 9 in the Recombinant Mouse L-Chain Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Recombinant Mouse L-Chain Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd493 b:19.7 occ:0.20 OE2 A:GLU53 2.0 38.5 1.0 NE2 A:HIS49 2.0 18.8 1.0 CE1 A:HIS49 3.0 16.7 1.0 CD2 A:HIS49 3.0 18.2 1.0 CD A:GLU53 3.2 30.2 1.0 CG A:GLU53 4.0 16.0 1.0 OE1 A:GLU53 4.1 30.7 1.0 ND1 A:HIS49 4.1 22.4 1.0 CG A:HIS49 4.2 17.0 1.0

Cadmium binding site 8 out of 9 in the Recombinant Mouse L-Chain Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Recombinant Mouse L-Chain Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd494 b:27.4 occ:0.30 CD A:CD490 1.4 23.9 0.4 O A:HOH2126 1.9 25.6 1.0 OE1 A:GLU60 2.4 21.5 1.0 OE2 A:GLU60 2.9 21.3 1.0 CD A:GLU60 3.0 16.0 1.0 OE2 A:GLU56 3.5 35.4 1.0 OE1 A:GLU57 3.5 21.8 1.0 O A:HOH2122 4.0 30.2 1.0 O A:HOH2136 4.1 31.8 1.0 CD A:GLU56 4.4 30.4 1.0 CG A:GLU60 4.5 10.8 1.0 CG A:GLU56 4.5 16.5 1.0 CD A:GLU57 4.6 29.4 1.0

Cadmium binding site 9 out of 9 in the Recombinant Mouse L-Chain Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of Recombinant Mouse L-Chain Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd495 b:32.4 occ:0.20 O A:HOH2125 2.1 35.7 1.0 OE1 A:GLU56 3.2 33.5 1.0 OE2 A:GLU56 3.5 35.4 1.0 CD A:GLU56 3.6 30.4 1.0 O A:HOH2122 4.0 30.2 1.0 CG A:GLU53 4.8 16.0 1.0 CG A:GLU56 4.8 16.5 1.0 CB A:GLU56 4.9 9.2 1.0 O A:HOH2052 5.0 49.9 1.0

T.Granier, B.Gallois, B.L.D'estaintot, A.Dautant, J.M.Chevalier, J.M.Mellado, C.Beaumont, P.Santambrogio, P.Arosio, G.Precigoux. Structure of Mouse L-Chain Ferritin at 1.6 A Resolution Acta Crystallogr.,Sect.D V. 57 1491 2001.
ISSN: ISSN 0907-4449
PubMed: 11679711
DOI: 10.1107/S0907444901008897