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Cadmium in PDB 1hrs: A Crystallographic Study of Haem Binding to Ferritin

Protein crystallography data

The structure of A Crystallographic Study of Haem Binding to Ferritin, PDB code: 1hrs was solved by G.Precigoux, J.Yariv, B.Gallois, A.Dautant, C.Courseille, B.Langloisd'estaintot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.60
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 184.000, 184.000, 184.000, 90.00, 90.00, 90.00
R / Rfree (%) 18 / n/a

Cadmium Binding Sites:

The binding sites of Cadmium atom in the A Crystallographic Study of Haem Binding to Ferritin (pdb code 1hrs). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the A Crystallographic Study of Haem Binding to Ferritin, PDB code: 1hrs:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 1hrs

Go back to Cadmium Binding Sites List in 1hrs
Cadmium binding site 1 out of 2 in the A Crystallographic Study of Haem Binding to Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of A Crystallographic Study of Haem Binding to Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd201

b:10.0
occ:0.50
OE1 A:GLN82 2.7 23.4 1.0
NE2 A:GLN82 3.3 23.9 1.0
CD A:GLN82 3.5 23.1 1.0
CG A:LYS83 4.7 25.9 1.0

Cadmium binding site 2 out of 2 in 1hrs

Go back to Cadmium Binding Sites List in 1hrs
Cadmium binding site 2 out of 2 in the A Crystallographic Study of Haem Binding to Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of A Crystallographic Study of Haem Binding to Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd202

b:31.2
occ:0.33
O A:HOH235 3.2 12.9 1.0
OD2 A:ASP127 3.4 44.2 1.0
O A:CYS126 3.5 42.3 1.0
OD1 A:ASP127 3.7 44.4 1.0
CG A:ASP127 3.9 44.5 1.0
O A:HOH363 4.1 20.0 0.3
OE1 A:GLU130 4.2 65.4 1.0
C A:CYS126 4.8 38.2 1.0

Reference:

G.Precigoux, J.Yariv, B.Gallois, A.Dautant, C.Courseille, B.L.D'estaintot. A Crystallographic Study of Haem Binding to Ferritin. Acta Crystallogr.,Sect.D V. 50 739 1994.
ISSN: ISSN 0907-4449
PubMed: 15299370
DOI: 10.1107/S0907444994003227
Page generated: Sat Dec 12 08:09:30 2020

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