Atomistry » Cadmium » PDB 1dpe-1gwg » 1hsl
Atomistry »
  Cadmium »
    PDB 1dpe-1gwg »
      1hsl »

Cadmium in PDB 1hsl: Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors

Protein crystallography data

The structure of Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors, PDB code: 1hsl was solved by N.Yao, S.Trakhanov, F.A.Quiocho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.89
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.160, 102.520, 64.980, 90.00, 93.56, 90.00
R / Rfree (%) 19.9 / n/a

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors (pdb code 1hsl). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 7 binding sites of Cadmium where determined in the Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors, PDB code: 1hsl:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7;

Cadmium binding site 1 out of 7 in 1hsl

Go back to Cadmium Binding Sites List in 1hsl
Cadmium binding site 1 out of 7 in the Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd750

b:56.9
occ:1.00
O A:ALA1 1.6 64.3 1.0
O A:HOH810 1.6 23.2 1.0
OE1 A:GLU205 2.7 39.8 1.0
C A:ALA1 2.8 63.3 1.0
CD A:GLU205 3.4 37.9 1.0
OE2 A:GLU205 3.6 38.9 1.0
N A:ILE2 3.8 61.1 1.0
CA A:ALA1 3.9 64.3 1.0
N A:ALA1 4.2 64.4 1.0
CA A:ILE2 4.3 59.7 1.0
CB A:ILE2 4.5 61.1 1.0
CG A:GLU205 4.8 36.3 1.0
CG2 A:ILE2 4.9 62.9 1.0

Cadmium binding site 2 out of 7 in 1hsl

Go back to Cadmium Binding Sites List in 1hsl
Cadmium binding site 2 out of 7 in the Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd751

b:65.9
occ:1.00
O A:HOH923 1.6 24.9 1.0
OD2 A:ASP177 2.4 29.0 1.0
CG A:ASP177 2.9 28.0 1.0
OD1 A:ASP177 2.9 27.2 1.0
CB A:ASP177 4.2 20.7 1.0
O A:HOH461 4.5 14.4 1.0

Cadmium binding site 3 out of 7 in 1hsl

Go back to Cadmium Binding Sites List in 1hsl
Cadmium binding site 3 out of 7 in the Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd752

b:27.2
occ:1.00
OE2 A:GLU128 2.0 20.0 1.0
OD2 A:ASP187 2.4 13.9 1.0
CD A:GLU128 3.1 27.1 1.0
OE1 A:GLU128 3.4 26.6 1.0
CG A:ASP187 3.4 19.1 1.0
NE2 A:HIS129 3.6 23.4 1.0
OD1 A:ASP187 3.7 15.8 1.0
CE1 A:HIS129 4.1 19.5 1.0
NZ A:LYS189 4.4 44.4 1.0
CG A:GLU128 4.4 25.1 1.0
CE A:LYS189 4.5 43.7 1.0
CD2 A:HIS129 4.7 24.8 1.0
CG A:LEU190 4.7 23.8 1.0
CD A:LYS189 4.8 40.8 1.0
CB A:ASP187 4.8 17.0 1.0
CD1 A:LEU190 5.0 21.3 1.0

Cadmium binding site 4 out of 7 in 1hsl

Go back to Cadmium Binding Sites List in 1hsl
Cadmium binding site 4 out of 7 in the Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd753

b:21.3
occ:1.00
O B:HOH896 1.7 8.0 1.0
O B:HOH895 1.7 2.4 1.0
OE2 A:GLU25 2.2 15.6 1.0
OE1 B:GLU36 2.4 15.1 1.0
OE2 B:GLU36 2.5 12.0 1.0
OE1 A:GLU25 2.8 9.7 1.0
CD B:GLU36 2.8 14.2 1.0
CD A:GLU25 2.8 13.5 1.0
O A:HOH375 3.2 40.9 1.0
O A:HOH416 4.1 21.7 1.0
CG B:GLU36 4.3 7.9 1.0
CD B:LYS39 4.3 29.4 1.0
CG A:GLU25 4.4 13.0 1.0
NH1 B:ARG40 4.5 15.3 1.0
NE B:ARG40 4.5 10.4 1.0
NZ B:LYS39 4.8 37.8 1.0
CG2 B:THR222 4.9 10.2 1.0
O A:HOH821 5.0 58.0 1.0

Cadmium binding site 5 out of 7 in 1hsl

Go back to Cadmium Binding Sites List in 1hsl
Cadmium binding site 5 out of 7 in the Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd756

b:36.9
occ:1.00
O A:HOH261 1.7 30.5 1.0
ND1 A:HIS129 2.8 22.2 1.0
O A:HOH263 2.8 9.5 1.0
CG A:HIS129 3.5 23.1 1.0
CB A:HIS129 3.7 20.4 1.0
CE1 A:HIS129 3.8 19.5 1.0
CZ A:PHE125 4.6 19.6 1.0
CA A:HIS129 4.7 24.5 1.0
O A:HIS129 4.7 28.4 1.0
CD2 A:HIS129 4.7 24.8 1.0
NE2 A:HIS129 4.8 23.4 1.0
O A:LYS186 5.0 35.1 1.0
CE2 A:PHE125 5.0 19.0 1.0

Cadmium binding site 6 out of 7 in 1hsl

Go back to Cadmium Binding Sites List in 1hsl
Cadmium binding site 6 out of 7 in the Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd754

b:24.1
occ:1.00
O B:HOH887 1.7 46.7 1.0
O B:HOH942 1.8 21.4 1.0
OD2 B:ASP156 2.3 9.9 1.0
O B:HOH954 2.8 22.0 1.0
CG B:ASP156 3.0 6.3 1.0
OD1 B:ASP156 3.1 2.0 1.0
O B:HOH949 4.1 31.6 1.0
O B:HOH951 4.2 35.7 1.0
O B:GLY153 4.3 13.3 1.0
CB B:ASP156 4.4 4.5 1.0
CA B:ASP156 5.0 3.8 1.0

Cadmium binding site 7 out of 7 in 1hsl

Go back to Cadmium Binding Sites List in 1hsl
Cadmium binding site 7 out of 7 in the Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Refined 1.89 Angstroms Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport(Slash)Chemosensory Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd755

b:17.9
occ:1.00
O B:HOH944 1.7 3.2 1.0
O B:HOH890 2.0 4.2 1.0
OD1 B:ASP232 2.6 14.1 1.0
CG B:ASP232 3.3 19.1 1.0
OD2 B:ASP232 3.3 19.1 1.0
NZ B:LYS171 4.1 19.2 1.0
CB B:ASP232 4.7 9.9 1.0

Reference:

N.Yao, S.Trakhanov, F.A.Quiocho. Refined 1.89-A Structure of the Histidine-Binding Protein Complexed with Histidine and Its Relationship with Many Other Active Transport/Chemosensory Proteins. Biochemistry V. 33 4769 1994.
ISSN: ISSN 0006-2960
PubMed: 8161536
DOI: 10.1021/BI00182A004
Page generated: Fri Aug 28 11:55:42 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy