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Cadmium in PDB 1i6w: The Crystal Structure of Bacillus Subtilis Lipase: A Minimal Alpha/Beta Hydrolase Enzyme

Enzymatic activity of The Crystal Structure of Bacillus Subtilis Lipase: A Minimal Alpha/Beta Hydrolase Enzyme

All present enzymatic activity of The Crystal Structure of Bacillus Subtilis Lipase: A Minimal Alpha/Beta Hydrolase Enzyme:
3.1.1.3;

Protein crystallography data

The structure of The Crystal Structure of Bacillus Subtilis Lipase: A Minimal Alpha/Beta Hydrolase Enzyme, PDB code: 1i6w was solved by G.Van Pouderoyen, T.Eggert, K.-E.Jaeger, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.639, 83.201, 95.752, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 20.6

Cadmium Binding Sites:

The binding sites of Cadmium atom in the The Crystal Structure of Bacillus Subtilis Lipase: A Minimal Alpha/Beta Hydrolase Enzyme (pdb code 1i6w). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the The Crystal Structure of Bacillus Subtilis Lipase: A Minimal Alpha/Beta Hydrolase Enzyme, PDB code: 1i6w:

Cadmium binding site 1 out of 1 in 1i6w

Go back to Cadmium Binding Sites List in 1i6w
Cadmium binding site 1 out of 1 in the The Crystal Structure of Bacillus Subtilis Lipase: A Minimal Alpha/Beta Hydrolase Enzyme


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of The Crystal Structure of Bacillus Subtilis Lipase: A Minimal Alpha/Beta Hydrolase Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd518

b:59.8
occ:1.00
 O B:HOH748 2.7 44.6 1.0
ND2 B:ASN174 4.0 11.0 1.0
O B:HOH660 4.0 22.8 1.0
O B:HOH758 4.6 39.2 1.0
O B:ASN174 4.6 14.5 1.0
CD2 A:HIS3 4.7 28.5 1.0
CA B:ASN174 4.7 10.9 1.0
NE2 A:HIS3 4.7 29.7 1.0
O B:HOH628 4.8 29.0 1.0
O B:GLU2 4.8 23.5 1.0
N B:GLU2 4.8 25.2 1.0
CD2 B:HIS3 4.8 21.5 1.0
CG B:ASN174 4.8 11.3 1.0
N A:HIS3 4.9 24.9 1.0
O B:HOH696 4.9 39.3 1.0
C B:ASN174 5.0 12.8 1.0

Reference:

G.Van Pouderoyen, T.Eggert, K.E.Jaeger, B.W.Dijkstra. The Crystal Structure of Bacillus Subtilis Lipase: A Minimal Alpha/Beta Hydrolase Fold Enzyme. J.Mol.Biol. V. 309 215 2001.
ISSN: ISSN 0022-2836
PubMed: 11491291
DOI: 10.1006/JMBI.2001.4659
Page generated: Fri Jul 19 13:31:11 2024

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