Cadmium in PDB 1ier: Cubic Crystal Structure of Native Horse Spleen Ferritin

The structure of Cubic Crystal Structure of Native Horse Spleen Ferritin, PDB code: 1ier was solved by T.Granier, B.Gallois, A.Dautant, B.Langlois D'estaintot, G.Precigoux, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.26
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	182.900, 182.900, 182.900, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / n/a

The binding sites of Cadmium atom in the Cubic Crystal Structure of Native Horse Spleen Ferritin (pdb code 1ier). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Cubic Crystal Structure of Native Horse Spleen Ferritin, PDB code: 1ier:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the Cubic Crystal Structure of Native Horse Spleen Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Cubic Crystal Structure of Native Horse Spleen Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd201 b:20.0 occ:0.16 OE1 A:GLU130 2.6 50.3 1.0 CD A:GLU130 3.4 47.3 1.0 OE2 A:GLU130 3.4 45.8 1.0 O A:HOH288 4.2 36.2 1.0 CG A:GLU130 4.9 45.8 1.0 CD A:CD202 5.0 16.5 0.3

Cadmium binding site 2 out of 3 in the Cubic Crystal Structure of Native Horse Spleen Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Cubic Crystal Structure of Native Horse Spleen Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:16.5 occ:0.33 OD1 A:ASP127 3.7 52.2 1.0 OE1 A:GLU130 4.1 50.3 1.0 OG A:SER131 4.5 48.1 1.0 CB A:GLU130 4.8 42.5 1.0 CD A:CD201 5.0 20.0 0.2 CG A:ASP127 5.0 48.5 1.0

Cadmium binding site 3 out of 3 in the Cubic Crystal Structure of Native Horse Spleen Ferritin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Cubic Crystal Structure of Native Horse Spleen Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd203 b:16.1 occ:0.50 OD2 A:ASP80 2.2 29.0 1.0 CG A:ASP80 3.1 17.8 1.0 OD1 A:ASP80 3.3 19.4 1.0 CB A:ASP80 4.7 17.1 1.0

T.Granier, B.Gallois, A.Dautant, B.Langlois D'estaintot, G.Precigoux. Comparison of the Structures of the Cubic and Tetragonal Forms of Horse-Spleen Apoferritin. Acta Crystallogr.,Sect.D V. 53 580 1997.
ISSN: ISSN 0907-4449
PubMed: 15299889
DOI: 10.1107/S0907444997003314