Cadmium in PDB 1ij2: GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position

The structure of GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position, PDB code: 1ij2 was solved by D.L.Akey, V.N.Malashkevich, P.S.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	35.763, 46.332, 51.359, 90.00, 90.00, 90.00
R / Rfree (%)	24.3 / 27.9

The binding sites of Cadmium atom in the GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position (pdb code 1ij2). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 5 binding sites of Cadmium where determined in the GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position, PDB code: 1ij2:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;

Cadmium binding site 1 out of 5 in the GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:27.1 occ:0.65 CD A:CD202 0.0 27.1 0.7 CD A:CD202 2.0 39.1 0.3 ND1 A:HIS18 2.4 27.9 1.0 O A:HOH237 2.5 49.9 1.0 CE1 A:HIS18 3.1 29.5 1.0 CG A:HIS18 3.5 24.7 1.0 CB A:HIS18 3.9 24.0 1.0 CA A:HIS18 4.1 20.1 1.0 NE2 A:HIS18 4.4 28.0 1.0 OE2 A:GLU22 4.4 35.1 1.0 CD2 A:HIS18 4.5 29.7 1.0 O A:HIS18 4.7 20.4 1.0 O A:HOH217 4.7 39.5 1.0 C A:HIS18 4.8 21.4 1.0 ND2 A:ASN21 4.8 26.1 1.0

Cadmium binding site 2 out of 5 in the GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:39.1 occ:0.35 CD A:CD202 0.0 39.1 0.3 CD A:CD202 2.0 27.1 0.7 ND1 A:HIS18 2.7 27.9 1.0 CE1 A:HIS18 3.5 29.5 1.0 CG A:HIS18 3.6 24.7 1.0 CB A:HIS18 4.0 24.0 1.0 NE2 A:HIS18 4.5 28.0 1.0 O A:HOH237 4.5 49.9 1.0 CD2 A:HIS18 4.5 29.7 1.0 CA A:HIS18 4.7 20.1 1.0

Cadmium binding site 3 out of 5 in the GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd201 b:25.6 occ:1.00 O B:HOH243 2.2 38.1 1.0 NE2 B:HIS18 2.3 21.4 1.0 OE2 B:GLU22 2.4 30.2 1.0 O B:HOH241 2.5 41.5 1.0 O B:HOH203 2.5 26.0 1.0 CD2 B:HIS18 3.3 24.8 1.0 CE1 B:HIS18 3.3 26.6 1.0 CD B:GLU22 3.4 26.2 1.0 CG B:GLU22 3.8 22.7 1.0 NZ C:LYS27 4.0 27.8 1.0 O C:HOH213 4.3 36.1 1.0 ND1 B:HIS18 4.4 22.6 1.0 CG B:HIS18 4.4 20.5 1.0 O C:HOH219 4.4 36.6 1.0 OE1 B:GLU22 4.5 30.9 1.0 O C:HOH212 4.6 32.2 1.0

Cadmium binding site 4 out of 5 in the GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position within 5.0Å range: probe atom residue distance (Å) B Occ C:Cd203 b:28.9 occ:0.77 CD C:CD203 0.0 28.9 0.8 CD C:CD203 2.1 37.2 0.2 ND1 C:HIS18 2.4 29.7 1.0 O C:HOH237 2.6 51.0 1.0 CE1 C:HIS18 3.2 26.7 1.0 CG C:HIS18 3.5 27.2 1.0 CB C:HIS18 3.9 20.5 1.0 CA C:HIS18 4.1 16.2 1.0 NE2 C:HIS18 4.3 29.2 1.0 OE1 C:GLU22 4.5 31.7 1.0 CD2 C:HIS18 4.5 26.4 1.0 ND2 C:ASN21 4.7 33.5 1.0 O C:HIS18 4.7 15.8 1.0 O C:HOH220 4.8 54.5 1.0 C C:HIS18 4.9 18.7 1.0 O C:HOH225 5.0 38.0 1.0

Cadmium binding site 5 out of 5 in the GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of GCN4-Pvtl Coiled-Coil Trimer with Threonine at the A(16) Position within 5.0Å range: probe atom residue distance (Å) B Occ C:Cd203 b:37.2 occ:0.23 CD C:CD203 0.0 37.2 0.2 CD C:CD203 2.1 28.9 0.8 ND1 C:HIS18 2.8 29.7 1.0 O C:HOH220 3.0 54.5 1.0 CE1 C:HIS18 3.5 26.7 1.0 CG C:HIS18 3.5 27.2 1.0 CB C:HIS18 3.9 20.5 1.0 O C:HOH237 4.0 51.0 1.0 NE2 C:HIS18 4.3 29.2 1.0 CD2 C:HIS18 4.4 26.4 1.0 CA C:HIS18 4.7 16.2 1.0

D.L.Akey, V.N.Malashkevich, P.S.Kim. Buried Polar Residues in Coiled-Coil Interfaces. Biochemistry V. 40 6352 2001.
ISSN: ISSN 0006-2960
PubMed: 11371197
DOI: 10.1021/BI002829W