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Cadmium in PDB 1j5l: uc(Nmr) Structure of the Isolated BETA_C Domain of Lobster Metallothionein-1

Cadmium Binding Sites:

The binding sites of Cadmium atom in the uc(Nmr) Structure of the Isolated BETA_C Domain of Lobster Metallothionein-1 (pdb code 1j5l). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the uc(Nmr) Structure of the Isolated BETA_C Domain of Lobster Metallothionein-1, PDB code: 1j5l:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in 1j5l

Go back to Cadmium Binding Sites List in 1j5l
Cadmium binding site 1 out of 3 in the uc(Nmr) Structure of the Isolated BETA_C Domain of Lobster Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of uc(Nmr) Structure of the Isolated BETA_C Domain of Lobster Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd32

b:0.1
occ:1.00
SG A:CYS29 2.5 0.1 1.0
SG A:CYS18 2.5 0.1 1.0
SG A:CYS22 2.5 0.1 1.0
SG A:CYS12 2.5 0.2 1.0
HB3 A:CYS29 2.8 0.1 1.0
HA A:CYS18 2.9 0.2 1.0
HB3 A:CYS12 3.0 0.1 1.0
HB2 A:CYS22 3.1 0.1 1.0
CB A:CYS29 3.2 0.1 1.0
HB2 A:CYS18 3.2 0.2 1.0
CB A:CYS18 3.2 0.2 1.0
CB A:CYS22 3.3 0.1 1.0
CB A:CYS12 3.3 0.1 1.0
CA A:CYS18 3.4 0.1 1.0
HB3 A:CYS22 3.6 0.1 1.0
HB2 A:CYS29 3.6 0.1 1.0
HB2 A:CYS26 3.6 0.1 1.0
HB2 A:CYS12 3.8 0.2 1.0
C A:CYS18 4.0 0.2 1.0
HD2 A:PRO30 4.1 0.2 1.0
CD A:CD34 4.1 0.1 1.0
CD A:CD33 4.1 0.1 1.0
O A:CYS18 4.2 0.3 1.0
HB3 A:CYS18 4.3 0.2 1.0
SG A:CYS6 4.4 0.1 1.0
HB2 A:CYS10 4.4 1.0 1.0
CB A:CYS26 4.5 0.1 1.0
CA A:CYS29 4.5 0.2 1.0
HB3 A:CYS26 4.5 0.1 1.0
CA A:CYS12 4.6 0.2 1.0
HA A:CYS29 4.6 0.2 1.0
HA A:CYS12 4.6 0.2 1.0
CA A:CYS22 4.7 0.1 1.0
HG23 A:THR21 4.8 1.0 1.0
N A:CYS18 4.8 0.2 1.0
H A:CYS22 4.8 0.1 1.0
N A:ALA19 4.8 0.2 1.0
N A:CYS22 4.9 0.1 1.0
H A:CYS29 4.9 0.2 1.0
HD3 A:PRO30 4.9 0.2 1.0
CD A:PRO30 5.0 0.2 1.0

Cadmium binding site 2 out of 3 in 1j5l

Go back to Cadmium Binding Sites List in 1j5l
Cadmium binding site 2 out of 3 in the uc(Nmr) Structure of the Isolated BETA_C Domain of Lobster Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of uc(Nmr) Structure of the Isolated BETA_C Domain of Lobster Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd33

b:0.1
occ:1.00
SG A:CYS6 2.5 0.1 1.0
SG A:CYS28 2.5 0.1 1.0
SG A:CYS10 2.5 0.2 1.0
SG A:CYS29 2.6 0.1 1.0
HB3 A:CYS26 2.7 0.1 1.0
H A:CYS29 2.8 0.2 1.0
N A:CYS29 2.9 0.2 1.0
HB3 A:CYS6 3.0 0.1 1.0
HB2 A:CYS28 3.1 0.2 1.0
HB3 A:CYS10 3.1 0.9 1.0
CB A:CYS10 3.2 0.6 1.0
CB A:CYS28 3.3 0.2 1.0
HB2 A:CYS10 3.3 1.0 1.0
CB A:CYS6 3.3 0.1 1.0
C A:CYS28 3.3 0.2 1.0
HA A:CYS29 3.3 0.2 1.0
CA A:CYS29 3.4 0.2 1.0
CB A:CYS29 3.5 0.1 1.0
CB A:CYS26 3.7 0.1 1.0
CA A:CYS28 3.8 0.2 1.0
HB2 A:CYS26 3.8 0.1 1.0
HB3 A:CYS29 3.9 0.1 1.0
HA A:PRO2 3.9 0.7 1.0
HA A:CYS6 3.9 0.2 1.0
O A:CYS26 4.0 0.1 1.0
O A:CYS28 4.0 0.2 1.0
H A:CYS28 4.1 0.1 1.0
CD A:CD34 4.1 0.1 1.0
N A:CYS28 4.1 0.2 1.0
CD A:CD32 4.1 0.1 1.0
HB2 A:CYS6 4.2 0.1 1.0
CA A:CYS6 4.2 0.1 1.0
HB3 A:CYS28 4.3 0.2 1.0
HB2 A:CYS29 4.4 0.1 1.0
C A:CYS26 4.5 0.1 1.0
HB3 A:PRO2 4.6 1.4 1.0
SG A:CYS12 4.6 0.2 1.0
CA A:CYS10 4.7 0.4 1.0
O A:CYS6 4.7 0.4 1.0
SG A:CYS26 4.7 0.1 1.0
CA A:CYS26 4.7 0.1 1.0
HA A:CYS28 4.8 0.2 1.0
H A:CYS3 4.8 0.5 1.0
H A:CYS10 4.9 1.1 1.0
HB2 A:CYS12 4.9 0.2 1.0
C A:CYS29 4.9 0.2 1.0
CA A:PRO2 4.9 0.8 1.0
C A:CYS6 5.0 0.2 1.0
C A:SER27 5.0 0.2 1.0
N A:CYS10 5.0 0.4 1.0

Cadmium binding site 3 out of 3 in 1j5l

Go back to Cadmium Binding Sites List in 1j5l
Cadmium binding site 3 out of 3 in the uc(Nmr) Structure of the Isolated BETA_C Domain of Lobster Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of uc(Nmr) Structure of the Isolated BETA_C Domain of Lobster Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd34

b:0.1
occ:1.00
H A:CYS3 2.5 0.5 1.0
SG A:CYS22 2.5 0.1 1.0
SG A:CYS6 2.5 0.1 1.0
SG A:CYS3 2.5 0.1 1.0
SG A:CYS26 2.6 0.1 1.0
HB3 A:CYS3 2.9 0.3 1.0
HB2 A:CYS6 3.0 0.1 1.0
HB3 A:CYS22 3.0 0.1 1.0
CB A:CYS3 3.3 0.3 1.0
CB A:CYS22 3.3 0.1 1.0
HG23 A:THR21 3.3 1.0 1.0
CB A:CYS6 3.3 0.1 1.0
HB3 A:CYS26 3.3 0.1 1.0
CB A:CYS26 3.4 0.1 1.0
HB2 A:CYS26 3.4 0.1 1.0
N A:CYS3 3.4 0.5 1.0
HA A:CYS22 3.5 0.1 1.0
HB3 A:CYS6 3.8 0.1 1.0
CA A:CYS22 3.9 0.1 1.0
HA A:PRO2 3.9 0.7 1.0
O A:THR21 4.0 0.2 1.0
CA A:CYS3 4.0 0.6 1.0
CD A:CD33 4.1 0.1 1.0
CD A:CD32 4.1 0.1 1.0
HB2 A:CYS3 4.2 0.5 1.0
HB2 A:CYS22 4.2 0.1 1.0
CG2 A:THR21 4.2 0.2 1.0
HG22 A:THR21 4.4 1.1 1.0
SG A:CYS29 4.4 0.1 1.0
C A:THR21 4.4 0.2 1.0
N A:CYS22 4.4 0.1 1.0
C A:PRO2 4.5 0.7 1.0
CA A:CYS6 4.6 0.1 1.0
C A:CYS3 4.7 0.7 1.0
N A:CYS6 4.7 0.1 1.0
CA A:PRO2 4.7 0.8 1.0
HG21 A:THR21 4.8 1.0 1.0
CA A:CYS26 4.8 0.1 1.0
H A:LYS5 4.8 0.2 1.0
HA A:CYS3 4.9 0.7 1.0
C A:LYS5 4.9 0.2 1.0
H A:GLU4 4.9 1.0 1.0
HA A:CYS6 5.0 0.2 1.0
H A:CYS6 5.0 0.2 1.0

Reference:

A.Munoz, F.H.Forsterling, C.F.Shaw Iii, D.H.Petering. Structure of the (113)Cd(3)Beta Domains From Homarus Americanus Metallothionein-1: Hydrogen Bonding and Solvent Accessibility of Sulfur Atoms J.Biol.Inorg.Chem. V. 7 713 2002.
ISSN: ISSN 0949-8257
PubMed: 12203008
DOI: 10.1007/S00775-002-0345-3
Page generated: Fri Aug 28 11:59:59 2020
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