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Cadmium in PDB 1j5m: Solution Structure of the Synthetic 113CD_3 BETA_N Domain of Lobster Metallothionein-1

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Solution Structure of the Synthetic 113CD_3 BETA_N Domain of Lobster Metallothionein-1 (pdb code 1j5m). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Solution Structure of the Synthetic 113CD_3 BETA_N Domain of Lobster Metallothionein-1, PDB code: 1j5m:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in 1j5m

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Cadmium binding site 1 out of 3 in the Solution Structure of the Synthetic 113CD_3 BETA_N Domain of Lobster Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Solution Structure of the Synthetic 113CD_3 BETA_N Domain of Lobster Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd29

b:0.1
occ:1.00
SG A:CYS22 2.6 0.1 1.0
SG A:CYS9 2.6 0.1 1.0
SG A:CYS5 2.6 0.1 1.0
SG A:CYS25 2.6 0.1 1.0
HB3 A:CYS22 2.9 0.3 1.0
HB3 A:CYS25 2.9 0.1 1.0
HB3 A:CYS5 2.9 0.9 1.0
HA A:CYS9 3.0 0.2 1.0
H A:GLU10 3.2 0.2 1.0
HB2 A:CYS9 3.2 0.7 1.0
H A:CYS25 3.2 0.1 1.0
CB A:CYS22 3.2 0.1 1.0
CB A:CYS25 3.3 0.1 1.0
CB A:CYS5 3.3 0.1 1.0
CB A:CYS9 3.3 0.1 1.0
HB2 A:SER24 3.5 0.3 1.0
CA A:CYS9 3.6 0.2 1.0
N A:CYS25 3.7 0.1 1.0
HB2 A:CYS5 3.8 0.9 1.0
HB2 A:CYS22 3.8 0.4 1.0
HB2 A:CYS11 3.9 0.1 1.0
H A:SER24 3.9 0.3 1.0
N A:GLU10 4.0 0.2 1.0
CA A:CYS25 4.1 0.1 1.0
CD A:CD30 4.1 0.2 1.0
HB2 A:CYS25 4.1 0.1 1.0
O A:CYS22 4.1 0.2 1.0
HB3 A:CYS9 4.3 0.7 1.0
C A:CYS9 4.3 0.2 1.0
CD A:CD31 4.4 0.1 1.0
O A:LYS8 4.5 0.4 1.0
C A:SER24 4.5 0.1 1.0
HA A:CYS5 4.5 0.2 1.0
CA A:CYS22 4.5 0.1 1.0
CA A:CYS5 4.5 0.2 1.0
CB A:SER24 4.5 0.1 1.0
SG A:CYS20 4.6 0.2 1.0
C A:CYS22 4.6 0.2 1.0
HA A:CYS25 4.6 0.1 1.0
SG A:CYS16 4.7 0.2 1.0
N A:SER24 4.7 0.1 1.0
CA A:SER24 4.9 0.1 1.0
HG A:SER24 4.9 0.9 1.0
N A:CYS9 4.9 0.2 1.0
CB A:CYS11 5.0 0.1 1.0

Cadmium binding site 2 out of 3 in 1j5m

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Cadmium binding site 2 out of 3 in the Solution Structure of the Synthetic 113CD_3 BETA_N Domain of Lobster Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Solution Structure of the Synthetic 113CD_3 BETA_N Domain of Lobster Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd30

b:0.2
occ:1.00
SG A:CYS16 2.5 0.2 1.0
SG A:CYS5 2.5 0.1 1.0
SG A:CYS20 2.6 0.2 1.0
SG A:CYS4 2.6 0.2 1.0
HB2 A:CYS20 2.9 1.2 1.0
HB2 A:CYS4 3.1 0.9 1.0
HA A:CYS16 3.1 0.4 1.0
HB3 A:CYS16 3.1 0.3 1.0
HB2 A:CYS5 3.1 0.9 1.0
CB A:CYS16 3.3 0.2 1.0
CB A:CYS20 3.3 0.3 1.0
CB A:CYS4 3.4 0.1 1.0
CB A:CYS5 3.4 0.1 1.0
HB3 A:CYS22 3.7 0.3 1.0
CA A:CYS16 3.7 0.2 1.0
N A:CYS5 3.9 0.2 1.0
HA A:CYS20 4.0 0.4 1.0
C A:CYS4 4.0 0.2 1.0
O A:GLY15 4.0 0.8 1.0
CD A:CD31 4.0 0.1 1.0
H A:CYS5 4.0 0.3 1.0
HB3 A:CYS20 4.1 0.8 1.0
CD A:CD29 4.1 0.1 1.0
HB3 A:CYS5 4.2 0.9 1.0
HB3 A:CYS4 4.2 0.9 1.0
CA A:CYS20 4.2 0.4 1.0
N A:CYS16 4.3 0.3 1.0
HB2 A:CYS16 4.3 0.2 1.0
CA A:CYS4 4.3 0.2 1.0
CA A:CYS5 4.3 0.2 1.0
O A:CYS4 4.4 0.4 1.0
C A:GLY15 4.4 0.6 1.0
H A:CYS11 4.5 0.1 1.0
H A:GLU10 4.5 0.2 1.0
SG A:CYS25 4.5 0.1 1.0
H A:LYS17 4.5 0.4 1.0
H A:CYS22 4.5 0.2 1.0
CB A:CYS22 4.6 0.1 1.0
HB2 A:CYS22 4.7 0.4 1.0
N A:CYS4 4.8 0.2 1.0
H A:CYS4 4.8 0.3 1.0
H A:CYS16 4.9 0.4 1.0
HB2 A:GLU10 4.9 0.7 1.0
HD2 A:PRO3 4.9 0.5 1.0
HA A:CYS5 5.0 0.2 1.0
C A:CYS16 5.0 0.3 1.0

Cadmium binding site 3 out of 3 in 1j5m

Go back to Cadmium Binding Sites List in 1j5m
Cadmium binding site 3 out of 3 in the Solution Structure of the Synthetic 113CD_3 BETA_N Domain of Lobster Metallothionein-1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Solution Structure of the Synthetic 113CD_3 BETA_N Domain of Lobster Metallothionein-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd31

b:0.1
occ:1.00
SG A:CYS16 2.5 0.2 1.0
SG A:CYS11 2.5 0.2 1.0
SG A:CYS27 2.6 0.2 1.0
SG A:CYS25 2.6 0.1 1.0
HB2 A:CYS11 2.8 0.1 1.0
HB2 A:CYS27 2.8 0.2 1.0
HB2 A:CYS25 2.9 0.1 1.0
CB A:CYS11 3.2 0.1 1.0
CB A:CYS27 3.2 0.2 1.0
CB A:CYS25 3.3 0.1 1.0
HB2 A:CYS16 3.3 0.2 1.0
CB A:CYS16 3.3 0.2 1.0
HA A:CYS11 3.4 0.1 1.0
HB3 A:CYS16 3.4 0.3 1.0
HA A:CYS27 3.5 0.2 1.0
HB3 A:CYS25 3.8 0.1 1.0
CA A:CYS11 3.8 0.1 1.0
CA A:CYS27 3.8 0.2 1.0
CD A:CD30 4.0 0.2 1.0
HB3 A:CYS11 4.1 0.1 1.0
HB3 A:CYS27 4.1 0.2 1.0
SG A:CYS20 4.2 0.2 1.0
N A:CYS27 4.3 0.2 1.0
H A:CYS11 4.3 0.1 1.0
H A:CYS27 4.3 0.2 1.0
N A:CYS11 4.4 0.1 1.0
CD A:CD29 4.4 0.1 1.0
CA A:CYS25 4.6 0.1 1.0
C A:CYS25 4.8 0.2 1.0
CA A:CYS16 4.8 0.2 1.0
SG A:CYS5 5.0 0.1 1.0
O A:CYS25 5.0 0.2 1.0
H A:CYS16 5.0 0.4 1.0
C A:ARG26 5.0 0.2 1.0

Reference:

A.Munoz, F.H.Forsterling, C.F.Shaw Iii, D.H.Petering. Structure of the (113)Cd(3)Beta Domains From Homarus Americanus Metallothionein-1: Hydrogen Bonding and Solvent Accessibility of Sulfur Atoms J.Biol.Inorg.Chem. V. 7 713 2002.
ISSN: ISSN 0949-8257
PubMed: 12203008
DOI: 10.1007/S00775-002-0345-3
Page generated: Fri Aug 28 12:00:10 2020
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