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Cadmium in PDB 1kqs: The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis
Protein crystallography data
The structure of The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis, PDB code: 1kqs
was solved by
T.M.Schmeing,
A.C.Seila,
J.L.Hansen,
B.Freeborn,
J.K.Soukup,
S.A.Scaringe,
S.A.Strobel,
P.B.Moore,
T.A.Steitz,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 20.00 / 3.10 |
| Space group | C 2 2 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 212.784, 300.349, 574.961, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 17.3 / 22 |
Other elements in 1kqs:
The structure of The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis also contains other interesting chemical elements:
| Magnesium | (Mg) | 117 atoms |
| Potassium | (K) | 2 atoms |
| Chlorine | (Cl) | 22 atoms |
| Sodium | (Na) | 86 atoms |
Cadmium Binding Sites:
The binding sites of Cadmium atom in the The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis
(pdb code 1kqs). This binding sites where shown within
5.0 Angstroms radius around Cadmium atom.
In total 5 binding sites of Cadmium where determined in the The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis, PDB code: 1kqs:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
In total 5 binding sites of Cadmium where determined in the The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis, PDB code: 1kqs:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
Cadmium binding site 1 out of 5 in 1kqs
Go back to
Cadmium Binding Sites List in 1kqs
Cadmium binding site 1 out
of 5 in the The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 1 of The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis within 5.0Å range:
|
Cadmium binding site 2 out of 5 in 1kqs
Go back to
Cadmium Binding Sites List in 1kqs
Cadmium binding site 2 out
of 5 in the The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 2 of The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis within 5.0Å range:
|
Cadmium binding site 3 out of 5 in 1kqs
Go back to
Cadmium Binding Sites List in 1kqs
Cadmium binding site 3 out
of 5 in the The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 3 of The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis within 5.0Å range:
|
Cadmium binding site 4 out of 5 in 1kqs
Go back to
Cadmium Binding Sites List in 1kqs
Cadmium binding site 4 out
of 5 in the The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 4 of The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis within 5.0Å range:
|
Cadmium binding site 5 out of 5 in 1kqs
Go back to
Cadmium Binding Sites List in 1kqs
Cadmium binding site 5 out
of 5 in the The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 5 of The Haloarcula Marismortui 50S Complexed with A Pretranslocational Intermediate in Protein Synthesis within 5.0Å range:
|
Reference:
T.M.Schmeing,
A.C.Seila,
J.L.Hansen,
B.Freeborn,
J.K.Soukup,
S.A.Scaringe,
S.A.Strobel,
P.B.Moore,
T.A.Steitz.
A Pre-Translocational Intermediate in Protein Synthesis Observed in Crystals of Enzymatically Active 50S Subunits. Nat.Struct.Biol. V. 9 225 2002.
ISSN: ISSN 1072-8368
PubMed: 11828326
Page generated: Sat Dec 12 08:10:41 2020
ISSN: ISSN 1072-8368
PubMed: 11828326
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