Cadmium in the structure of Choristoneura Fumiferana (Spruce Budworm) Antifreeze Protein Isoform 337 (pdb 1l0s)

The binding sites of Cadmium atom in the structure of Choristoneura Fumiferana (Spruce Budworm) Antifreeze Protein Isoform 337 (pdb code 1l0s). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom. The 1l0s structure was solved by E.K.LEINALA, P.L.DAVIES, Z.JIA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 46.8-2.3 Space group P65 a (A) 128.400 b (A) 128.400 c (A) 68.320 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 22.3 Rfree (%) 26.4 Cadmium Binding Sites: Cadmium binding site 1 out of 2 in 1l0s Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 1l0s. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: Lys29, D: Pro60, conact list: Atom Atom Distance (A) Cd CD D:Lys29 4.51 Cd CB D:Pro60 4.80 interactive model: Cadmium binding site 2 out of 2 in 1l0s Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cadmium in the PDB 1l0s. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: Ser12, D: Ala13, D: Asn14, D: Asp28, D: Lys29, D: Hoh210, conact list: Atom Atom Distance (A) Cd CB D:Ser12 3.80 Cd OG D:Ser12 3.73 Cd C D:Ser12 4.83 Cd CA D:Ser12 4.89 Cd N D:Ala13 4.42 Cd C D:Ala13 4.87 Cd CA D:Ala13 4.97 Cd N D:Asn14 3.89 Cd CB D:Asn14 3.80 Cd ND2 D:Asn14 4.73 Cd OD1 D:Asn14 2.84 Cd CG D:Asn14 3.59 Cd CA D:Asn14 4.46 Cd OD1 D:Asp28 4.25 Cd N D:Lys29 4.68 Cd CB D:Lys29 4.50 Cd CE D:Lys29 4.65 Cd CA D:Lys29 4.78 Cd O D:Hoh210 4.40 interactive model: