Atomistry » Cadmium » PDB 1jv4-1mwr » 1l0s
Atomistry »
  Cadmium »
    PDB 1jv4-1mwr »
      1l0s »

Cadmium in PDB 1l0s: Choristoneura Fumiferana (Spruce Budworm) Antifreeze Protein Isoform 337

Protein crystallography data

The structure of Choristoneura Fumiferana (Spruce Budworm) Antifreeze Protein Isoform 337, PDB code: 1l0s was solved by E.K.Leinala, P.L.Davies, Z.Jia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.79 / 2.30
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 128.400, 128.400, 68.320, 90.00, 90.00, 120.00
R / Rfree (%) 22.3 / 26.4

Other elements in 1l0s:

The structure of Choristoneura Fumiferana (Spruce Budworm) Antifreeze Protein Isoform 337 also contains other interesting chemical elements:

Iodine (I) 8 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Choristoneura Fumiferana (Spruce Budworm) Antifreeze Protein Isoform 337 (pdb code 1l0s). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Choristoneura Fumiferana (Spruce Budworm) Antifreeze Protein Isoform 337, PDB code: 1l0s:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 1l0s

Go back to Cadmium Binding Sites List in 1l0s
Cadmium binding site 1 out of 2 in the Choristoneura Fumiferana (Spruce Budworm) Antifreeze Protein Isoform 337


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Choristoneura Fumiferana (Spruce Budworm) Antifreeze Protein Isoform 337 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cd201

b:1.0
occ:1.00
CD D:LYS29 4.5 56.8 1.0
CB D:PRO60 4.8 36.4 1.0

Cadmium binding site 2 out of 2 in 1l0s

Go back to Cadmium Binding Sites List in 1l0s
Cadmium binding site 2 out of 2 in the Choristoneura Fumiferana (Spruce Budworm) Antifreeze Protein Isoform 337


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Choristoneura Fumiferana (Spruce Budworm) Antifreeze Protein Isoform 337 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cd202

b:99.9
occ:1.00
OD1 D:ASN14 2.8 37.3 1.0
CG D:ASN14 3.6 44.1 1.0
OG D:SER12 3.7 39.2 1.0
CB D:SER12 3.8 29.4 1.0
CB D:ASN14 3.8 39.9 1.0
N D:ASN14 3.9 36.2 1.0
OD1 D:ASP28 4.3 38.2 1.0
O D:HOH210 4.4 34.8 1.0
N D:ALA13 4.4 23.0 1.0
CA D:ASN14 4.5 40.0 1.0
CB D:LYS29 4.5 42.8 1.0
CE D:LYS29 4.6 63.9 1.0
N D:LYS29 4.7 24.0 1.0
ND2 D:ASN14 4.7 28.9 1.0
CA D:LYS29 4.8 34.1 1.0
C D:SER12 4.8 29.9 1.0
C D:ALA13 4.9 38.1 1.0
CA D:SER12 4.9 28.4 1.0
CA D:ALA13 5.0 32.4 1.0

Reference:

E.K.Leinala, P.L.Davies, Z.Jia. Crystal Structure of Beta-Helical Antifreeze Protein Points to A General Ice Binding Model. Structure V. 10 619 2002.
ISSN: ISSN 0969-2126
PubMed: 12015145
DOI: 10.1016/S0969-2126(02)00745-1
Page generated: Thu Jul 10 11:00:52 2025

Last articles

Cl in 7YNU
Cl in 7YCT
Cl in 7YP5
Cl in 7YOH
Cl in 7YK6
Cl in 7YIB
Cl in 7YD2
Cl in 7YI6
Cl in 7YD3
Cl in 7YCB
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy