Cadmium in PDB 1lxt: Structure of Phosphotransferase Phosphoglucomutase From Rabbit

All present enzymatic activity of Structure of Phosphotransferase Phosphoglucomutase From Rabbit:
5.4.2.2;

The structure of Structure of Phosphotransferase Phosphoglucomutase From Rabbit, PDB code: 1lxt was solved by W.J.Ray Junior, S.Baranidharan, Y.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	6.00 / 2.70
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	174.420, 174.420, 101.120, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 26

The binding sites of Cadmium atom in the Structure of Phosphotransferase Phosphoglucomutase From Rabbit (pdb code 1lxt). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Structure of Phosphotransferase Phosphoglucomutase From Rabbit, PDB code: 1lxt:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Structure of Phosphotransferase Phosphoglucomutase From Rabbit


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of Phosphotransferase Phosphoglucomutase From Rabbit within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd562 b:2.1 occ:1.00 OG A:SER116 2.1 32.3 1.0 O2 A:SO4563 2.2 77.2 1.0 OD2 A:ASP287 2.3 13.2 1.0 OD1 A:ASP289 2.3 36.0 1.0 OD1 A:ASP291 2.4 39.4 1.0 CG A:ASP287 3.3 18.8 1.0 CG A:ASP289 3.3 34.5 1.0 CB A:SER116 3.4 31.2 1.0 OD2 A:ASP289 3.5 37.5 1.0 S A:SO4563 3.6 76.9 1.0 CG A:ASP291 3.6 36.1 1.0 OD1 A:ASP287 3.6 20.9 1.0 O1 A:SO4563 4.1 76.8 1.0 CA A:SER116 4.3 29.8 1.0 O3 A:SO4563 4.3 76.7 1.0 CG A:ARG292 4.3 36.0 1.0 OD2 A:ASP291 4.4 36.3 1.0 N A:ASP291 4.4 29.9 1.0 N A:HIS117 4.5 33.0 1.0 O4 A:SO4563 4.5 77.2 1.0 CB A:ASP291 4.5 33.9 1.0 CB A:ASP287 4.6 18.4 1.0 C A:SER116 4.7 30.7 1.0 CB A:ASP289 4.7 30.4 1.0 CB A:ARG292 4.7 33.6 1.0 C A:ASP291 4.8 30.8 1.0 CA A:ASP291 4.8 31.5 1.0 N A:ASP289 4.8 25.2 1.0 N A:ARG292 4.9 29.8 1.0 O A:HOH568 4.9 33.5 1.0 NZ A:LYS388 4.9 27.5 1.0 NE A:ARG292 5.0 40.1 1.0

Cadmium binding site 2 out of 2 in the Structure of Phosphotransferase Phosphoglucomutase From Rabbit


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Structure of Phosphotransferase Phosphoglucomutase From Rabbit within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd562 b:2.1 occ:1.00 OG B:SER116 2.0 16.4 1.0 OD1 B:ASP291 2.0 17.2 1.0 OD2 B:ASP287 2.1 16.7 1.0 OD1 B:ASP289 2.5 26.1 1.0 O2 B:SO4563 2.6 84.2 1.0 CG B:ASP291 3.2 18.0 1.0 CG B:ASP287 3.2 17.7 1.0 CB B:SER116 3.4 12.9 1.0 CG B:ASP289 3.8 20.7 1.0 OD1 B:ASP287 3.8 20.4 1.0 OD2 B:ASP291 3.9 18.4 1.0 S B:SO4563 4.0 82.5 1.0 CA B:SER116 4.1 9.4 1.0 CD B:ARG292 4.2 28.9 1.0 N B:ASP291 4.3 14.1 1.0 CB B:ASP291 4.3 14.4 1.0 CB B:ASP287 4.4 12.8 1.0 N B:HIS117 4.5 9.6 1.0 C B:SER116 4.5 8.6 1.0 OD2 B:ASP289 4.5 19.8 1.0 CG B:ARG292 4.6 26.0 1.0 O4 B:SO4563 4.7 82.7 1.0 CA B:ASP291 4.7 13.0 1.0 O1 B:SO4563 4.7 82.6 1.0 CB B:ASP289 4.7 18.2 1.0 N B:ARG292 4.7 12.0 1.0 O3 B:SO4563 4.8 83.1 1.0 NE B:ARG292 4.8 33.1 1.0 N B:ASP289 4.9 15.2 1.0 C B:ASP291 4.9 11.6 1.0

Y.Liu, W.J.Ray, S.Baranidharan. Structure of Rabbit Muscle Phosphoglucomutase Refined at 2.4 A Resolution. Acta Crystallogr.,Sect.D V. 53 392 1997.
ISSN: ISSN 0907-4449
PubMed: 15299905
DOI: 10.1107/S0907444997000875