Atomistry » Cadmium » PDB 1gyn-1jre » 1m0g
Atomistry »
  Cadmium »
    PDB 1gyn-1jre »
      1m0g »

Cadmium in PDB 1m0g: Solution Structure of the Alpha Domain of MT_NC

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Solution Structure of the Alpha Domain of MT_NC (pdb code 1m0g). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Solution Structure of the Alpha Domain of MT_NC, PDB code: 1m0g:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in 1m0g

Go back to Cadmium Binding Sites List in 1m0g
Cadmium binding site 1 out of 4 in the Solution Structure of the Alpha Domain of MT_NC


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Solution Structure of the Alpha Domain of MT_NC within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd101

b:0.0
occ:1.00
SG A:CYS49 2.4 0.0 1.0
SG A:CYS38 2.5 0.0 1.0
SG A:CYS39 2.6 0.0 1.0
SG A:CYS53 2.6 0.0 1.0
HB3 A:CYS49 2.8 0.0 1.0
HA A:CYS53 3.0 0.0 1.0
HB2 A:CYS53 3.0 0.0 1.0
CB A:CYS49 3.2 0.0 1.0
CB A:CYS53 3.2 0.0 1.0
HB3 A:CYS38 3.3 0.0 1.0
HB3 A:CYS39 3.4 0.0 1.0
CB A:CYS38 3.5 0.0 1.0
CB A:CYS39 3.6 0.0 1.0
SG A:CYS55 3.6 0.0 1.0
CA A:CYS53 3.6 0.0 1.0
HB2 A:CYS49 3.8 0.0 1.0
H A:CYS39 3.8 0.0 1.0
CD A:CD103 3.9 0.0 1.0
HB2 A:CYS42 3.9 0.0 1.0
O A:GLY52 4.0 0.0 1.0
N A:CYS39 4.0 0.0 1.0
HB2 A:CYS55 4.1 0.0 1.0
H A:CYS55 4.1 0.0 1.0
HB3 A:CYS53 4.2 0.0 1.0
HB2 A:CYS38 4.3 0.0 1.0
CD A:CD102 4.3 0.0 1.0
HA A:CYS49 4.3 0.0 1.0
H A:VAL54 4.3 0.0 1.0
C A:CYS38 4.4 0.0 1.0
CA A:CYS49 4.4 0.0 1.0
HB2 A:CYS39 4.5 0.0 1.0
CA A:CYS39 4.5 0.0 1.0
CB A:CYS55 4.5 0.0 1.0
CA A:CYS38 4.5 0.0 1.0
C A:CYS53 4.6 0.0 1.0
N A:CYS53 4.7 0.0 1.0
CB A:CYS42 4.7 0.0 1.0
C A:GLY52 4.8 0.0 1.0
N A:VAL54 4.8 0.0 1.0
SG A:CYS42 4.8 0.0 1.0
HB3 A:CYS42 5.0 0.0 1.0

Cadmium binding site 2 out of 4 in 1m0g

Go back to Cadmium Binding Sites List in 1m0g
Cadmium binding site 2 out of 4 in the Solution Structure of the Alpha Domain of MT_NC


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Solution Structure of the Alpha Domain of MT_NC within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd102

b:0.0
occ:1.00
SG A:CYS42 2.3 0.0 1.0
SG A:CYS46 2.5 0.0 1.0
SG A:CYS49 2.6 0.0 1.0
SG A:CYS65 2.6 0.0 1.0
HB3 A:CYS65 3.3 0.0 1.0
HB3 A:CYS42 3.3 0.0 1.0
CB A:CYS42 3.4 0.0 1.0
HB2 A:CYS49 3.4 0.0 1.0
HB3 A:CYS46 3.4 0.0 1.0
CB A:CYS65 3.4 0.0 1.0
CB A:CYS46 3.5 0.0 1.0
CB A:CYS49 3.6 0.0 1.0
HB2 A:CYS42 3.6 0.0 1.0
SG A:CYS55 3.7 0.0 1.0
HB2 A:CYS65 3.7 0.0 1.0
HB2 A:CYS46 3.7 0.0 1.0
H A:CYS49 3.8 0.0 1.0
CD A:CD103 3.9 0.0 1.0
CD A:CD104 3.9 0.0 1.0
HB3 A:LYS48 4.0 0.0 1.0
HG21 A:VAL54 4.0 0.0 1.0
HB2 A:LYS48 4.1 0.0 1.0
N A:CYS49 4.2 0.0 1.0
CD A:CD101 4.3 0.0 1.0
HD2 A:PRO43 4.3 0.0 1.0
HB3 A:CYS49 4.5 0.0 1.0
CA A:CYS49 4.5 0.0 1.0
CB A:LYS48 4.5 0.0 1.0
H A:VAL54 4.5 0.0 1.0
SG A:CYS60 4.6 0.0 1.0
SG A:CYS39 4.7 0.0 1.0
CA A:CYS42 4.8 0.0 1.0
HA A:CYS49 4.8 0.0 1.0
HG11 A:VAL54 4.8 0.0 1.0
HA A:CYS42 4.8 0.0 1.0
CA A:CYS65 4.8 0.0 1.0
CA A:CYS46 4.9 0.0 1.0
C A:LYS48 4.9 0.0 1.0
HA A:CYS65 5.0 0.0 1.0

Cadmium binding site 3 out of 4 in 1m0g

Go back to Cadmium Binding Sites List in 1m0g
Cadmium binding site 3 out of 4 in the Solution Structure of the Alpha Domain of MT_NC


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Solution Structure of the Alpha Domain of MT_NC within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd103

b:0.0
occ:1.00
SG A:CYS41 2.3 0.0 1.0
SG A:CYS39 2.3 0.0 1.0
SG A:CYS55 2.6 0.0 1.0
SG A:CYS42 2.6 0.0 1.0
HB2 A:CYS42 2.9 0.0 1.0
CB A:CYS42 3.3 0.0 1.0
C A:CYS41 3.4 0.0 1.0
HB2 A:CYS39 3.4 0.0 1.0
O A:CYS41 3.5 0.0 1.0
CB A:CYS41 3.5 0.0 1.0
CB A:CYS39 3.5 0.0 1.0
HB3 A:CYS55 3.6 0.0 1.0
N A:CYS42 3.6 0.0 1.0
CB A:CYS55 3.6 0.0 1.0
H A:CYS41 3.6 0.0 1.0
HB3 A:CYS41 3.7 0.0 1.0
CA A:CYS41 3.9 0.0 1.0
HB2 A:CYS55 3.9 0.0 1.0
CD A:CD101 3.9 0.0 1.0
CD A:CD102 3.9 0.0 1.0
CD A:CD104 3.9 0.0 1.0
SG A:CYS60 3.9 0.0 1.0
CA A:CYS42 4.0 0.0 1.0
H A:CYS42 4.0 0.0 1.0
HB3 A:CYS39 4.0 0.0 1.0
HB2 A:CYS60 4.1 0.0 1.0
HB3 A:CYS42 4.2 0.0 1.0
N A:CYS41 4.2 0.0 1.0
HA A:CYS42 4.4 0.0 1.0
HB2 A:CYS41 4.4 0.0 1.0
SG A:CYS49 4.5 0.0 1.0
CB A:CYS60 4.6 0.0 1.0
O A:CYS39 4.6 0.0 1.0
CA A:CYS39 4.7 0.0 1.0
C A:CYS39 4.8 0.0 1.0
SG A:CYS53 4.8 0.0 1.0
HA A:CYS41 4.9 0.0 1.0
CA A:CYS55 5.0 0.0 1.0

Cadmium binding site 4 out of 4 in 1m0g

Go back to Cadmium Binding Sites List in 1m0g
Cadmium binding site 4 out of 4 in the Solution Structure of the Alpha Domain of MT_NC


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Solution Structure of the Alpha Domain of MT_NC within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd104

b:0.0
occ:1.00
SG A:CYS64 2.3 0.0 1.0
SG A:CYS60 2.5 0.0 1.0
SG A:CYS55 2.6 0.0 1.0
SG A:CYS65 2.6 0.0 1.0
HA A:CYS60 2.9 0.0 1.0
HA A:CYS55 3.1 0.0 1.0
HB3 A:CYS64 3.1 0.0 1.0
HB2 A:CYS60 3.2 0.0 1.0
CB A:CYS60 3.3 0.0 1.0
HG21 A:VAL54 3.3 0.0 1.0
CB A:CYS64 3.4 0.0 1.0
HB2 A:CYS65 3.4 0.0 1.0
CB A:CYS55 3.5 0.0 1.0
HB3 A:CYS55 3.6 0.0 1.0
CA A:CYS60 3.6 0.0 1.0
CB A:CYS65 3.6 0.0 1.0
CA A:CYS55 3.7 0.0 1.0
HG22 A:VAL54 3.7 0.0 1.0
H A:CYS65 3.7 0.0 1.0
O A:THR59 3.8 0.0 1.0
N A:CYS65 3.8 0.0 1.0
CD A:CD103 3.9 0.0 1.0
CD A:CD102 3.9 0.0 1.0
N A:CYS55 3.9 0.0 1.0
CG2 A:VAL54 4.0 0.0 1.0
SG A:CYS42 4.1 0.0 1.0
C A:CYS64 4.1 0.0 1.0
HB2 A:CYS64 4.2 0.0 1.0
H A:CYS55 4.2 0.0 1.0
HB3 A:CYS60 4.3 0.0 1.0
CA A:CYS64 4.3 0.0 1.0
SG A:CYS41 4.4 0.0 1.0
CA A:CYS65 4.4 0.0 1.0
C A:VAL54 4.4 0.0 1.0
HG23 A:VAL54 4.4 0.0 1.0
HB3 A:CYS65 4.5 0.0 1.0
HB2 A:CYS55 4.5 0.0 1.0
C A:THR59 4.6 0.0 1.0
N A:CYS60 4.6 0.0 1.0
HE21 A:GLN66 4.6 0.0 1.0
O A:VAL54 4.6 0.0 1.0
C A:CYS60 4.7 0.0 1.0
HA A:CYS64 4.7 0.0 1.0
O A:CYS64 4.8 0.0 1.0
H A:ASP61 4.9 0.0 1.0
HA A:CYS65 4.9 0.0 1.0
H A:VAL54 5.0 0.0 1.0

Reference:

C.Capasso, V.Carginale, O.Crescenzi, D.Di Maro, E.Parisi, R.Spadaccini, P.A.Temussi. Solution Structure of MT_NC, A Novel Metallothionein From the Antarctic Fish Notothenia Coriiceps. Structure V. 11 435 2003.
ISSN: ISSN 0969-2126
PubMed: 12679021
DOI: 10.1016/S0969-2126(03)00044-3
Page generated: Fri Aug 28 12:09:07 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy