Chemical elements
  Cadmium
    Isotopes
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    Production
    Application
    Physical Properties
    Chemical Properties
    PDB 1a4k-1exq
    PDB 1f48-1ihu
    PDB 1ii0-1mhu
      1ii0
      1ii9
      1iiu
      1ij2
      1ilx
      1ipp
      1j5l
      1j5m
      1jcx
      1jcy
      1jdy
      1jec
      1jed
      1jee
      1jgm
      1ji9
      1jj2
      1jk4
      1jre
      1jv4
      1k73
      1k8a
      1k9m
      1kc8
      1kcq
      1kd1
      1kqs
      1kuf
      1kug
      1kui
      1kuk
      1l0s
      1l4z
      1lb3
      1ljo
      1lne
      1lrn
      1lro
      1lrq
      1lxt
      1m05
      1m0g
      1m0j
      1m1k
      1m5q
      1m8r
      1m8s
      1m90
      1mfm
      1mhu
    PDB 1mms-1qvg
    PDB 1qy0-1wb6
    PDB 1wje-2avp
    PDB 2b3p-2j6e
    PDB 2jdz-2x05
    PDB 2x09-3ccj
    PDB 3ccl-3ggf
    PDB 3h1u-3p5v
    PDB 3p5w-8ice

Cadmium in the structure of Crystal Structure of A Novel Sm-Like Archaeal Protein From Pyrobaculum Aerophilum (pdb 1m5q)






The binding sites of Cadmium atom in the structure of Crystal Structure of A Novel Sm-Like Archaeal Protein From Pyrobaculum Aerophilum (pdb code 1m5q). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom.
The 1m5q structure was solved by C.MURA, M.PHILLIPS, A.KOZHUKHOVSKY, D.EISENBERG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.0
Space groupP1211
a (A)83.322
b (A)172.427
c (A)148.108
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)19.1
Rfree (%)23.6


Cadmium Binding Sites:

Cadmium binding site 1 out of 28 in 1m5q


Cadmium binding site 1 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 1 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His39, A: Arg62, B: Glu15, B: Glu84, A: Hoh4034, A: Hoh4055, B: Hoh3008, B: Hoh3032, B: Hoh3060,

conact list:


AtomAtomDistance (A)
CdNE2 A:His392.25
CdND1 A:His394.38
CdCD2 A:His393.12
CdCE1 A:His393.31
CdCG A:His394.33
CdCZ A:Arg624.84
CdNE A:Arg624.14
CdNH2 A:Arg624.55
CdOE2 B:Glu154.46
CdCD B:Glu154.87
CdCG B:Glu154.14
CdOE1 B:Glu842.71
CdOE2 B:Glu842.98
CdCD B:Glu842.99
CdCG B:Glu844.16
CdO A:Hoh40342.61
CdO A:Hoh40552.68
CdO B:Hoh30082.51
CdO B:Hoh30323.93
CdO B:Hoh30604.94

interactive model:


Cadmium binding site 2 out of 28 in 1m5q


Cadmium binding site 2 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 2 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu15, A: Glu84, G: His39, G: Arg62, A: Hoh4041, G: Hoh4003, G: Hoh4058, G: Hoh4059,

conact list:


AtomAtomDistance (A)
CdOE1 A:Glu154.78
CdCG A:Glu154.14
CdOE1 A:Glu842.53
CdOE2 A:Glu842.76
CdCD A:Glu842.93
CdCG A:Glu844.38
CdNE2 G:His392.12
CdND1 G:His394.21
CdCD2 G:His393.09
CdCE1 G:His393.10
CdCG G:His394.24
CdCZ G:Arg624.84
CdNE G:Arg624.17
CdNH2 G:Arg624.52
CdO A:Hoh40414.15
CdO G:Hoh40032.60
CdO G:Hoh40582.47
CdO G:Hoh40594.00

interactive model:


Cadmium binding site 3 out of 28 in 1m5q


Cadmium binding site 3 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 3 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His39, B: Arg62, C: Glu15, C: Glu84, B: Hoh3003, C: Hoh177, C: Hoh194,

conact list:


AtomAtomDistance (A)
CdNE2 B:His392.19
CdND1 B:His394.26
CdCD2 B:His393.13
CdCE1 B:His393.17
CdCG B:His394.28
CdCD B:Arg624.95
CdCZ B:Arg624.82
CdNE B:Arg624.09
CdNH2 B:Arg624.55
CdOE1 C:Glu154.85
CdOE2 C:Glu153.79
CdCD C:Glu154.49
CdOE1 C:Glu842.38
CdOE2 C:Glu842.35
CdCD C:Glu842.66
CdCG C:Glu844.18
CdO B:Hoh30032.68
CdO C:Hoh1774.23
CdO C:Hoh1942.67

interactive model:


Cadmium binding site 4 out of 28 in 1m5q


Cadmium binding site 4 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 4 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: His39, C: Arg62, D: Glu15, D: Glu84, C: Hoh144, C: Hoh179, D: Hoh2040,

conact list:


AtomAtomDistance (A)
CdNE2 C:His392.44
CdND1 C:His394.58
CdCD2 C:His393.13
CdCE1 C:His393.59
CdCG C:His394.40
CdCD C:Arg624.96
CdCZ C:Arg624.63
CdNE C:Arg623.98
CdNH2 C:Arg624.25
CdOE1 D:Glu154.80
CdCG D:Glu154.19
CdOE1 D:Glu842.38
CdOE2 D:Glu842.36
CdCD D:Glu842.68
CdCG D:Glu844.21
CdO C:Hoh1442.49
CdO C:Hoh1792.82
CdO D:Hoh20404.05

interactive model:


Cadmium binding site 5 out of 28 in 1m5q


Cadmium binding site 5 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 5 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: His39, D: Arg62, E: Glu15, E: Glu84, D: Hoh2005, E: Hoh2029,

conact list:


AtomAtomDistance (A)
CdNE2 D:His392.29
CdND1 D:His394.42
CdCD2 D:His393.06
CdCE1 D:His393.40
CdCG D:His394.29
CdCD D:Arg624.97
CdCZ D:Arg624.72
CdNE D:Arg624.03
CdNH2 D:Arg624.42
CdOE1 E:Glu154.99
CdCG E:Glu154.19
CdOE1 E:Glu842.48
CdOE2 E:Glu842.15
CdCD E:Glu842.61
CdCG E:Glu844.12
CdO D:Hoh20052.59
CdO E:Hoh20292.39

interactive model:


Cadmium binding site 6 out of 28 in 1m5q


Cadmium binding site 6 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 6 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: His39, E: Arg62, F: Glu15, F: Glu84, E: Hoh2008, F: Hoh5038, F: Hoh5073,

conact list:


AtomAtomDistance (A)
CdNE2 E:His392.22
CdND1 E:His394.35
CdCD2 E:His393.01
CdCE1 E:His393.33
CdCG E:His394.24
CdCZ E:Arg624.87
CdNE E:Arg624.14
CdNH2 E:Arg624.61
CdOE2 F:Glu154.70
CdCG F:Glu154.25
CdOE1 F:Glu842.55
CdOE2 F:Glu842.53
CdCD F:Glu842.82
CdCG F:Glu844.31
CdO E:Hoh20082.55
CdO F:Hoh50384.11
CdO F:Hoh50732.50

interactive model:


Cadmium binding site 7 out of 28 in 1m5q


Cadmium binding site 7 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 7 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: His39, F: Arg62, G: Glu15, G: Glu84, F: Hoh5016, F: Hoh5049, F: Hoh5056, G: Hoh4016, G: Hoh4028, G: Hoh4044, G: Hoh4062,

conact list:


AtomAtomDistance (A)
CdNE2 F:His392.24
CdND1 F:His394.37
CdCD2 F:His393.01
CdCE1 F:His393.36
CdCG F:His394.23
CdCZ F:Arg624.68
CdNE F:Arg624.05
CdNH2 F:Arg624.35
CdOE1 G:Glu154.69
CdCD G:Glu154.97
CdCG G:Glu154.06
CdOE1 G:Glu842.32
CdOE2 G:Glu842.58
CdCD G:Glu842.77
CdCG G:Glu844.29
CdO F:Hoh50162.60
CdO F:Hoh50492.55
CdO F:Hoh50564.65
CdO G:Hoh40164.15
CdO G:Hoh40284.80
CdO G:Hoh40442.33
CdO G:Hoh40624.03

interactive model:


Cadmium binding site 8 out of 28 in 1m5q


Cadmium binding site 8 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 8 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: G: Lys91, H: His39, H: Arg62, I: Glu15, H: Gol4002, G: Hoh4040, H: Hoh5034, H: Hoh5061, I: Hoh5064,

conact list:


AtomAtomDistance (A)
CdCE G:Lys914.73
CdNZ G:Lys914.10
CdNE2 H:His392.39
CdND1 H:His394.49
CdCD2 H:His393.27
CdCE1 H:His393.42
CdCG H:His394.46
CdCD H:Arg624.81
CdNH1 H:Arg624.47
CdOE1 I:Glu153.64
CdCD I:Glu154.75
CdO2 H:Gol40024.79
CdC3 H:Gol40023.30
CdO3 H:Gol40022.59
CdC2 H:Gol40024.17
CdO G:Hoh40404.81
CdO H:Hoh50344.72
CdO H:Hoh50612.57
CdO I:Hoh50642.51

interactive model:


Cadmium binding site 9 out of 28 in 1m5q


Cadmium binding site 9 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 9 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: H: Glu15, N: His39, N: Arg62, A: Hoh4049, A: Hoh4052, N: Hoh5038,

conact list:


AtomAtomDistance (A)
CdOE1 H:Glu153.24
CdOE2 H:Glu152.65
CdCD H:Glu153.20
CdCG H:Glu154.52
CdNE2 N:His392.28
CdND1 N:His394.41
CdCD2 N:His393.13
CdCE1 N:His393.35
CdCG N:His394.34
CdCD N:Arg624.84
CdNH1 N:Arg624.34
CdO A:Hoh40494.59
CdO A:Hoh40524.91
CdO N:Hoh50382.72

interactive model:


Cadmium binding site 10 out of 28 in 1m5q


Cadmium binding site 10 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 10 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: F: Lys91, I: His39, I: Arg62, J: Glu15, F: Hoh5053, I: Hoh5045,

conact list:


AtomAtomDistance (A)
CdNZ F:Lys914.87
CdNE2 I:His392.26
CdND1 I:His394.37
CdCD2 I:His393.20
CdCE1 I:His393.27
CdCG I:His394.37
CdCD I:Arg624.89
CdNH1 I:Arg624.35
CdOE1 J:Glu152.78
CdOE2 J:Glu153.03
CdCD J:Glu153.08
CdCG J:Glu154.27
CdO F:Hoh50534.57
CdO I:Hoh50452.81

interactive model:


Cadmium binding site 11 out of 28 in 1m5q


Cadmium binding site 11 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 11 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Lys91, J: His39, J: Arg62, K: Glu15, J: Hoh4010, K: Hoh5019,

conact list:


AtomAtomDistance (A)
CdCE E:Lys914.27
CdNZ E:Lys914.25
CdNE2 J:His392.43
CdND1 J:His394.58
CdCD2 J:His393.17
CdCE1 J:His393.56
CdCG J:His394.42
CdCD J:Arg624.89
CdNH1 J:Arg624.50
CdCG K:Glu154.61
CdO J:Hoh40102.54
CdO K:Hoh50192.98

interactive model:


Cadmium binding site 12 out of 28 in 1m5q


Cadmium binding site 12 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 12 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Lys91, K: His39, K: Arg62, L: Glu15, D: Hoh2014, K: Hoh5020, L: Hoh2027,

conact list:


AtomAtomDistance (A)
CdCE D:Lys914.29
CdNZ D:Lys912.93
CdNE2 K:His392.29
CdND1 K:His394.42
CdCD2 K:His393.13
CdCE1 K:His393.36
CdCG K:His394.34
CdCD K:Arg624.78
CdNH1 K:Arg624.48
CdOE1 L:Glu152.65
CdOE2 L:Glu153.61
CdCD L:Glu153.22
CdCG L:Glu154.22
CdO D:Hoh20144.43
CdO K:Hoh50202.45
CdO L:Hoh20271.89

interactive model:


Cadmium binding site 13 out of 28 in 1m5q


Cadmium binding site 13 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 13 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Lys91, L: His39, L: Arg62, C: Hoh164, L: Hoh2016, L: Hoh2039, L: Hoh2058,

conact list:


AtomAtomDistance (A)
CdNZ C:Lys914.32
CdNE2 L:His392.40
CdND1 L:His394.53
CdCD2 L:His393.19
CdCE1 L:His393.49
CdCG L:His394.42
CdCD L:Arg624.93
CdNH1 L:Arg624.38
CdO C:Hoh1644.63
CdO L:Hoh20162.69
CdO L:Hoh20392.44
CdO L:Hoh20581.92

interactive model:


Cadmium binding site 14 out of 28 in 1m5q


Cadmium binding site 14 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 14 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Lys91, M: His39, M: Arg62, N: Glu15, B: Hoh3033, B: Hoh3047, M: Hoh5014, M: Hoh5025, M: Hoh5101, N: Hoh5042,

conact list:


AtomAtomDistance (A)
CdCE B:Lys914.80
CdNE2 M:His392.34
CdND1 M:His394.41
CdCD2 M:His393.34
CdCE1 M:His393.27
CdCG M:His394.48
CdCD M:Arg624.88
CdNH1 M:Arg624.36
CdCG N:Glu154.85
CdO B:Hoh30334.58
CdO B:Hoh30474.80
CdO M:Hoh50142.46
CdO M:Hoh50252.57
CdO M:Hoh51012.45
CdO N:Hoh50424.68

interactive model:


Cadmium binding site 15 out of 28 in 1m5q


Cadmium binding site 15 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 15 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: O: Glu15, O: Glu84, U: His39, U: Arg62, O: Hoh2053, O: Hoh2076, U: Hoh2027,

conact list:


AtomAtomDistance (A)
CdCG O:Glu154.25
CdOE1 O:Glu842.42
CdOE2 O:Glu842.62
CdCD O:Glu842.84
CdCG O:Glu844.32
CdNE2 U:His392.23
CdND1 U:His394.36
CdCD2 U:His393.07
CdCE1 U:His393.30
CdCG U:His394.28
CdCD U:Arg624.98
CdCZ U:Arg624.89
CdNE U:Arg624.13
CdNH2 U:Arg624.66
CdO O:Hoh20534.21
CdO O:Hoh20764.72
CdO U:Hoh20272.54

interactive model:


Cadmium binding site 16 out of 28 in 1m5q


Cadmium binding site 16 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 16 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: O: His39, O: Arg62, P: Glu15, P: Glu84, O: Hoh2023, O: Hoh2079, P: Hoh2051, P: Hoh2057,

conact list:


AtomAtomDistance (A)
CdNE2 O:His392.40
CdND1 O:His394.53
CdCD2 O:His393.06
CdCE1 O:His393.57
CdCG O:His394.33
CdCZ O:Arg624.65
CdNE O:Arg624.03
CdNH2 O:Arg624.27
CdOE1 P:Glu154.36
CdCB P:Glu154.94
CdOE1 P:Glu842.73
CdOE2 P:Glu842.99
CdCD P:Glu842.89
CdCG P:Glu843.88
CdO O:Hoh20232.63
CdO O:Hoh20792.42
CdO P:Hoh20514.32
CdO P:Hoh20572.55

interactive model:


Cadmium binding site 17 out of 28 in 1m5q


Cadmium binding site 17 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 17 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: P: His39, P: Arg62, Q: Glu15, Q: Glu84, P: Hoh2025, Q: Hoh2027, Q: Hoh2046, Q: Hoh2078,

conact list:


AtomAtomDistance (A)
CdNE2 P:His392.16
CdND1 P:His394.21
CdCD2 P:His393.21
CdCE1 P:His393.06
CdCG P:His394.32
CdCD P:Arg624.92
CdCZ P:Arg624.91
CdNE P:Arg624.11
CdNH2 P:Arg624.72
CdOE1 Q:Glu154.60
CdCD Q:Glu154.99
CdCG Q:Glu154.21
CdOE1 Q:Glu842.65
CdOE2 Q:Glu842.35
CdCD Q:Glu842.81
CdCG Q:Glu844.32
CdO P:Hoh20252.61
CdO Q:Hoh20272.57
CdO Q:Hoh20464.98
CdO Q:Hoh20783.89

interactive model:


Cadmium binding site 18 out of 28 in 1m5q


Cadmium binding site 18 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 18 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: Q: His39, Q: Arg62, R: Glu15, R: Glu84, Q: Hoh2018, R: Hoh4026, R: Hoh4039,

conact list:


AtomAtomDistance (A)
CdNE2 Q:His392.27
CdND1 Q:His394.35
CdCD2 Q:His393.24
CdCE1 Q:His393.23
CdCG Q:His394.38
CdCD Q:Arg625.00
CdCZ Q:Arg624.69
CdNE Q:Arg624.04
CdNH2 Q:Arg624.35
CdOE2 R:Glu154.68
CdCD R:Glu154.99
CdCG R:Glu154.17
CdOE1 R:Glu842.46
CdOE2 R:Glu842.53
CdCD R:Glu842.74
CdCG R:Glu844.15
CdO Q:Hoh20182.59
CdO R:Hoh40262.48
CdO R:Hoh40393.97

interactive model:


Cadmium binding site 19 out of 28 in 1m5q


Cadmium binding site 19 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 19 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: R: His39, R: Arg62, S: Glu15, S: Glu84, R: Hoh4013, R: Hoh4050, S: Hoh3053,

conact list:


AtomAtomDistance (A)
CdNE2 R:His392.16
CdND1 R:His394.28
CdCD2 R:His393.06
CdCE1 R:His393.20
CdCG R:His394.24
CdCZ R:Arg624.87
CdNE R:Arg624.18
CdNH2 R:Arg624.51
CdCG S:Glu154.38
CdOE1 S:Glu842.54
CdOE2 S:Glu842.40
CdCD S:Glu842.79
CdCG S:Glu844.31
CdO R:Hoh40132.54
CdO R:Hoh40502.57
CdO S:Hoh30534.10

interactive model:


Cadmium binding site 20 out of 28 in 1m5q


Cadmium binding site 20 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 20 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: S: His39, S: Arg62, T: Glu15, T: Glu84, S: Hoh3023, S: Hoh3034, T: Hoh165, T: Hoh184,

conact list:


AtomAtomDistance (A)
CdNE2 S:His392.26
CdND1 S:His394.37
CdCD2 S:His393.15
CdCE1 S:His393.29
CdCG S:His394.34
CdCZ S:Arg624.94
CdNE S:Arg624.17
CdNH2 S:Arg624.74
CdOE2 T:Glu154.87
CdCG T:Glu154.14
CdOE1 T:Glu842.60
CdOE2 T:Glu842.18
CdCD T:Glu842.71
CdCG T:Glu844.22
CdO S:Hoh30232.44
CdO S:Hoh30342.49
CdO T:Hoh1654.33
CdO T:Hoh1842.44

interactive model:


Cadmium binding site 21 out of 28 in 1m5q


Cadmium binding site 21 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 21 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: T: His39, T: Arg62, U: Glu15, U: Glu84, T: Hoh142, T: Hoh153, U: Hoh2042, U: Hoh2055, U: Hoh2062,

conact list:


AtomAtomDistance (A)
CdNE2 T:His392.41
CdND1 T:His394.54
CdCD2 T:His393.19
CdCE1 T:His393.50
CdCG T:His394.42
CdCD T:Arg624.92
CdCZ T:Arg624.67
CdNE T:Arg624.00
CdNH2 T:Arg624.35
CdOE1 U:Glu154.71
CdCG U:Glu154.15
CdOE1 U:Glu842.30
CdOE2 U:Glu842.58
CdCD U:Glu842.77
CdCG U:Glu844.31
CdO T:Hoh1422.48
CdO T:Hoh1532.49
CdO U:Hoh20424.26
CdO U:Hoh20554.44
CdO U:Hoh20622.50

interactive model:


Cadmium binding site 22 out of 28 in 1m5q


Cadmium binding site 22 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 22 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 22 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: P: Lys91, V: His39, V: Arg62, W: Glu15, P: Hoh2026, V: Hoh5028, V: Hoh5041, V: Hoh5104, V: Hoh5113, V: Hoh5122,

conact list:


AtomAtomDistance (A)
CdNZ P:Lys914.84
CdNE2 V:His392.39
CdND1 V:His394.53
CdCD2 V:His393.13
CdCE1 V:His393.52
CdCG V:His394.37
CdNE V:Arg624.89
CdNH2 V:Arg624.39
CdCG W:Glu154.76
CdO P:Hoh20264.66
CdO V:Hoh50282.62
CdO V:Hoh50412.55
CdO V:Hoh51044.51
CdO V:Hoh51132.97
CdO V:Hoh51222.11

interactive model:


Cadmium binding site 23 out of 28 in 1m5q


Cadmium binding site 23 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 23 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 23 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: W: His39, W: Arg62, X: Glu15, O: Hoh2028, O: Hoh2057, W: Hoh5056, W: Hoh5057, W: Hoh5076, W: Hoh5081,

conact list:


AtomAtomDistance (A)
CdNE2 W:His392.36
CdND1 W:His394.48
CdCD2 W:His393.21
CdCE1 W:His393.42
CdCG W:His394.41
CdCD W:Arg624.90
CdNH1 W:Arg624.29
CdCG X:Glu154.77
CdO O:Hoh20283.87
CdO O:Hoh20574.31
CdO W:Hoh50562.67
CdO W:Hoh50572.40
CdO W:Hoh50762.76
CdO W:Hoh50811.91

interactive model:


Cadmium binding site 24 out of 28 in 1m5q


Cadmium binding site 24 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 24 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 24 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: U: Lys91, X: His39, X: Arg62, Y: Glu15, U: Hoh2045, U: Hoh2071, X: Hoh5036, X: Hoh5038, X: Hoh5070, X: Hoh5095,

conact list:


AtomAtomDistance (A)
CdCE U:Lys914.56
CdNE2 X:His392.33
CdND1 X:His394.46
CdCD2 X:His393.15
CdCE1 X:His393.41
CdCG X:His394.37
CdCD X:Arg624.89
CdNH1 X:Arg624.47
CdOE2 Y:Glu154.85
CdCG Y:Glu154.50
CdO U:Hoh20454.55
CdO U:Hoh20714.84
CdO X:Hoh50362.51
CdO X:Hoh50383.20
CdO X:Hoh50702.69
CdO X:Hoh50951.93

interactive model:


Cadmium binding site 25 out of 28 in 1m5q


Cadmium binding site 25 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 25 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 25 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: T: Lys91, Y: His39, Y: Arg62, Z: Glu15, T: Hoh158, Y: Hoh5085, Z: Hoh5060, Z: Hoh5069,

conact list:


AtomAtomDistance (A)
CdCE T:Lys914.46
CdNE2 Y:His392.25
CdND1 Y:His394.38
CdCD2 Y:His393.12
CdCE1 Y:His393.31
CdCG Y:His394.32
CdCD Y:Arg624.77
CdNH1 Y:Arg624.27
CdOE1 Z:Glu152.91
CdOE2 Z:Glu152.61
CdCD Z:Glu152.87
CdCG Z:Glu154.02
CdO T:Hoh1584.36
CdO Y:Hoh50852.58
CdO Z:Hoh50601.94
CdO Z:Hoh50695.00

interactive model:


Cadmium binding site 26 out of 28 in 1m5q


Cadmium binding site 26 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 26 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 26 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: Z: His39, Z: Arg62, 1: Glu15, S: Hoh3012, Z: Hoh5031, Z: Hoh5042, Z: Hoh5057,

conact list:


AtomAtomDistance (A)
CdNE2 Z:His392.32
CdND1 Z:His394.45
CdCD2 Z:His393.18
CdCE1 Z:His393.39
CdCG Z:His394.39
CdCD Z:Arg624.79
CdNH1 Z:Arg624.28
CdCG 1:Glu154.78
CdO S:Hoh30124.54
CdO Z:Hoh50312.56
CdO Z:Hoh50422.59
CdO Z:Hoh50572.56

interactive model:


Cadmium binding site 27 out of 28 in 1m5q


Cadmium binding site 27 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 27 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 27 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: 1: His39, 1: Arg62, 2: Glu15, R: Gol4007, R: Hoh4021,

conact list:


AtomAtomDistance (A)
CdNE2 1:His392.35
CdND1 1:His394.47
CdCD2 1:His393.25
CdCE1 1:His393.38
CdCG 1:His394.44
CdCD 1:Arg624.84
CdNH1 1:Arg624.21
CdOE1 2:Glu152.71
CdOE2 2:Glu153.30
CdCD 2:Glu153.15
CdCG 2:Glu154.30
CdO1 R:Gol40074.63
CdO R:Hoh40212.63

interactive model:


Cadmium binding site 28 out of 28 in 1m5q


Cadmium binding site 28 out of 28 in 1m5q
Click to enlarge
stereopicture of Cadmium binding site 28 out of 28 in 1m5q
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 28 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: V: Glu15, 2: His39, 2: Arg62, Q: Hoh2031, Q: Hoh2034, Q: Hoh2061, 2: Hoh5049,

conact list:


AtomAtomDistance (A)
CdOE1 V:Glu152.69
CdOE2 V:Glu153.62
CdCD V:Glu153.23
CdCG V:Glu154.17
CdNE2 2:His392.33
CdND1 2:His394.43
CdCD2 2:His393.23
CdCE1 2:His393.34
CdCG 2:His394.41
CdNH1 2:Arg624.54
CdO Q:Hoh20314.56
CdO Q:Hoh20342.83
CdO Q:Hoh20614.64
CdO 2:Hoh50492.69

interactive model:




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