Cadmium in the structure of Crystal Structure of A Novel Sm-Like Archaeal Protein From Pyrobaculum Aerophilum (pdb 1m5q)

The binding sites of Cadmium atom in the structure of Crystal Structure of A Novel Sm-Like Archaeal Protein From Pyrobaculum Aerophilum (pdb code 1m5q). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom. The 1m5q structure was solved by C.MURA, M.PHILLIPS, A.KOZHUKHOVSKY, D.EISENBERG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 20.0-2.0 Space group P1211 a (A) 83.322 b (A) 172.427 c (A) 148.108 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19.1 Rfree (%) 23.6 Cadmium Binding Sites: Cadmium binding site 1 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His39, A: Arg62, B: Glu15, B: Glu84, A: Hoh4034, A: Hoh4055, B: Hoh3008, B: Hoh3032, B: Hoh3060, conact list: Atom Atom Distance (A) Cd NE2 A:His39 2.25 Cd ND1 A:His39 4.38 Cd CD2 A:His39 3.12 Cd CE1 A:His39 3.31 Cd CG A:His39 4.33 Cd CZ A:Arg62 4.84 Cd NE A:Arg62 4.14 Cd NH2 A:Arg62 4.55 Cd OE2 B:Glu15 4.46 Cd CD B:Glu15 4.87 Cd CG B:Glu15 4.14 Cd OE1 B:Glu84 2.71 Cd OE2 B:Glu84 2.98 Cd CD B:Glu84 2.99 Cd CG B:Glu84 4.16 Cd O A:Hoh4034 2.61 Cd O A:Hoh4055 2.68 Cd O B:Hoh3008 2.51 Cd O B:Hoh3032 3.93 Cd O B:Hoh3060 4.94 interactive model: Cadmium binding site 2 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu15, A: Glu84, G: His39, G: Arg62, A: Hoh4041, G: Hoh4003, G: Hoh4058, G: Hoh4059, conact list: Atom Atom Distance (A) Cd OE1 A:Glu15 4.78 Cd CG A:Glu15 4.14 Cd OE1 A:Glu84 2.53 Cd OE2 A:Glu84 2.76 Cd CD A:Glu84 2.93 Cd CG A:Glu84 4.38 Cd NE2 G:His39 2.12 Cd ND1 G:His39 4.21 Cd CD2 G:His39 3.09 Cd CE1 G:His39 3.10 Cd CG G:His39 4.24 Cd CZ G:Arg62 4.84 Cd NE G:Arg62 4.17 Cd NH2 G:Arg62 4.52 Cd O A:Hoh4041 4.15 Cd O G:Hoh4003 2.60 Cd O G:Hoh4058 2.47 Cd O G:Hoh4059 4.00 interactive model: Cadmium binding site 3 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: His39, B: Arg62, C: Glu15, C: Glu84, B: Hoh3003, C: Hoh177, C: Hoh194, conact list: Atom Atom Distance (A) Cd NE2 B:His39 2.19 Cd ND1 B:His39 4.26 Cd CD2 B:His39 3.13 Cd CE1 B:His39 3.17 Cd CG B:His39 4.28 Cd CD B:Arg62 4.95 Cd CZ B:Arg62 4.82 Cd NE B:Arg62 4.09 Cd NH2 B:Arg62 4.55 Cd OE1 C:Glu15 4.85 Cd OE2 C:Glu15 3.79 Cd CD C:Glu15 4.49 Cd OE1 C:Glu84 2.38 Cd OE2 C:Glu84 2.35 Cd CD C:Glu84 2.66 Cd CG C:Glu84 4.18 Cd O B:Hoh3003 2.68 Cd O C:Hoh177 4.23 Cd O C:Hoh194 2.67 interactive model: Cadmium binding site 4 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: His39, C: Arg62, D: Glu15, D: Glu84, C: Hoh144, C: Hoh179, D: Hoh2040, conact list: Atom Atom Distance (A) Cd NE2 C:His39 2.44 Cd ND1 C:His39 4.58 Cd CD2 C:His39 3.13 Cd CE1 C:His39 3.59 Cd CG C:His39 4.40 Cd CD C:Arg62 4.96 Cd CZ C:Arg62 4.63 Cd NE C:Arg62 3.98 Cd NH2 C:Arg62 4.25 Cd OE1 D:Glu15 4.80 Cd CG D:Glu15 4.19 Cd OE1 D:Glu84 2.38 Cd OE2 D:Glu84 2.36 Cd CD D:Glu84 2.68 Cd CG D:Glu84 4.21 Cd O C:Hoh144 2.49 Cd O C:Hoh179 2.82 Cd O D:Hoh2040 4.05 interactive model: Cadmium binding site 5 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: His39, D: Arg62, E: Glu15, E: Glu84, D: Hoh2005, E: Hoh2029, conact list: Atom Atom Distance (A) Cd NE2 D:His39 2.29 Cd ND1 D:His39 4.42 Cd CD2 D:His39 3.06 Cd CE1 D:His39 3.40 Cd CG D:His39 4.29 Cd CD D:Arg62 4.97 Cd CZ D:Arg62 4.72 Cd NE D:Arg62 4.03 Cd NH2 D:Arg62 4.42 Cd OE1 E:Glu15 4.99 Cd CG E:Glu15 4.19 Cd OE1 E:Glu84 2.48 Cd OE2 E:Glu84 2.15 Cd CD E:Glu84 2.61 Cd CG E:Glu84 4.12 Cd O D:Hoh2005 2.59 Cd O E:Hoh2029 2.39 interactive model: Cadmium binding site 6 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: E: His39, E: Arg62, F: Glu15, F: Glu84, E: Hoh2008, F: Hoh5038, F: Hoh5073, conact list: Atom Atom Distance (A) Cd NE2 E:His39 2.22 Cd ND1 E:His39 4.35 Cd CD2 E:His39 3.01 Cd CE1 E:His39 3.33 Cd CG E:His39 4.24 Cd CZ E:Arg62 4.87 Cd NE E:Arg62 4.14 Cd NH2 E:Arg62 4.61 Cd OE2 F:Glu15 4.70 Cd CG F:Glu15 4.25 Cd OE1 F:Glu84 2.55 Cd OE2 F:Glu84 2.53 Cd CD F:Glu84 2.82 Cd CG F:Glu84 4.31 Cd O E:Hoh2008 2.55 Cd O F:Hoh5038 4.11 Cd O F:Hoh5073 2.50 interactive model: Cadmium binding site 7 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: F: His39, F: Arg62, G: Glu15, G: Glu84, F: Hoh5016, F: Hoh5049, F: Hoh5056, G: Hoh4016, G: Hoh4028, G: Hoh4044, G: Hoh4062, conact list: Atom Atom Distance (A) Cd NE2 F:His39 2.24 Cd ND1 F:His39 4.37 Cd CD2 F:His39 3.01 Cd CE1 F:His39 3.36 Cd CG F:His39 4.23 Cd CZ F:Arg62 4.68 Cd NE F:Arg62 4.05 Cd NH2 F:Arg62 4.35 Cd OE1 G:Glu15 4.69 Cd CD G:Glu15 4.97 Cd CG G:Glu15 4.06 Cd OE1 G:Glu84 2.32 Cd OE2 G:Glu84 2.58 Cd CD G:Glu84 2.77 Cd CG G:Glu84 4.29 Cd O F:Hoh5016 2.60 Cd O F:Hoh5049 2.55 Cd O F:Hoh5056 4.65 Cd O G:Hoh4016 4.15 Cd O G:Hoh4028 4.80 Cd O G:Hoh4044 2.33 Cd O G:Hoh4062 4.03 interactive model: Cadmium binding site 8 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: G: Lys91, H: His39, H: Arg62, I: Glu15, H: Gol4002, G: Hoh4040, H: Hoh5034, H: Hoh5061, I: Hoh5064, conact list: Atom Atom Distance (A) Cd CE G:Lys91 4.73 Cd NZ G:Lys91 4.10 Cd NE2 H:His39 2.39 Cd ND1 H:His39 4.49 Cd CD2 H:His39 3.27 Cd CE1 H:His39 3.42 Cd CG H:His39 4.46 Cd CD H:Arg62 4.81 Cd NH1 H:Arg62 4.47 Cd OE1 I:Glu15 3.64 Cd CD I:Glu15 4.75 Cd O2 H:Gol4002 4.79 Cd C3 H:Gol4002 3.30 Cd O3 H:Gol4002 2.59 Cd C2 H:Gol4002 4.17 Cd O G:Hoh4040 4.81 Cd O H:Hoh5034 4.72 Cd O H:Hoh5061 2.57 Cd O I:Hoh5064 2.51 interactive model: Cadmium binding site 9 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: H: Glu15, N: His39, N: Arg62, A: Hoh4049, A: Hoh4052, N: Hoh5038, conact list: Atom Atom Distance (A) Cd OE1 H:Glu15 3.24 Cd OE2 H:Glu15 2.65 Cd CD H:Glu15 3.20 Cd CG H:Glu15 4.52 Cd NE2 N:His39 2.28 Cd ND1 N:His39 4.41 Cd CD2 N:His39 3.13 Cd CE1 N:His39 3.35 Cd CG N:His39 4.34 Cd CD N:Arg62 4.84 Cd NH1 N:Arg62 4.34 Cd O A:Hoh4049 4.59 Cd O A:Hoh4052 4.91 Cd O N:Hoh5038 2.72 interactive model: Cadmium binding site 10 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: F: Lys91, I: His39, I: Arg62, J: Glu15, F: Hoh5053, I: Hoh5045, conact list: Atom Atom Distance (A) Cd NZ F:Lys91 4.87 Cd NE2 I:His39 2.26 Cd ND1 I:His39 4.37 Cd CD2 I:His39 3.20 Cd CE1 I:His39 3.27 Cd CG I:His39 4.37 Cd CD I:Arg62 4.89 Cd NH1 I:Arg62 4.35 Cd OE1 J:Glu15 2.78 Cd OE2 J:Glu15 3.03 Cd CD J:Glu15 3.08 Cd CG J:Glu15 4.27 Cd O F:Hoh5053 4.57 Cd O I:Hoh5045 2.81 interactive model: Cadmium binding site 11 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: E: Lys91, J: His39, J: Arg62, K: Glu15, J: Hoh4010, K: Hoh5019, conact list: Atom Atom Distance (A) Cd CE E:Lys91 4.27 Cd NZ E:Lys91 4.25 Cd NE2 J:His39 2.43 Cd ND1 J:His39 4.58 Cd CD2 J:His39 3.17 Cd CE1 J:His39 3.56 Cd CG J:His39 4.42 Cd CD J:Arg62 4.89 Cd NH1 J:Arg62 4.50 Cd CG K:Glu15 4.61 Cd O J:Hoh4010 2.54 Cd O K:Hoh5019 2.98 interactive model: Cadmium binding site 12 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: Lys91, K: His39, K: Arg62, L: Glu15, D: Hoh2014, K: Hoh5020, L: Hoh2027, conact list: Atom Atom Distance (A) Cd CE D:Lys91 4.29 Cd NZ D:Lys91 2.93 Cd NE2 K:His39 2.29 Cd ND1 K:His39 4.42 Cd CD2 K:His39 3.13 Cd CE1 K:His39 3.36 Cd CG K:His39 4.34 Cd CD K:Arg62 4.78 Cd NH1 K:Arg62 4.48 Cd OE1 L:Glu15 2.65 Cd OE2 L:Glu15 3.61 Cd CD L:Glu15 3.22 Cd CG L:Glu15 4.22 Cd O D:Hoh2014 4.43 Cd O K:Hoh5020 2.45 Cd O L:Hoh2027 1.89 interactive model: Cadmium binding site 13 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Lys91, L: His39, L: Arg62, C: Hoh164, L: Hoh2016, L: Hoh2039, L: Hoh2058, conact list: Atom Atom Distance (A) Cd NZ C:Lys91 4.32 Cd NE2 L:His39 2.40 Cd ND1 L:His39 4.53 Cd CD2 L:His39 3.19 Cd CE1 L:His39 3.49 Cd CG L:His39 4.42 Cd CD L:Arg62 4.93 Cd NH1 L:Arg62 4.38 Cd O C:Hoh164 4.63 Cd O L:Hoh2016 2.69 Cd O L:Hoh2039 2.44 Cd O L:Hoh2058 1.92 interactive model: Cadmium binding site 14 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Lys91, M: His39, M: Arg62, N: Glu15, B: Hoh3033, B: Hoh3047, M: Hoh5014, M: Hoh5025, M: Hoh5101, N: Hoh5042, conact list: Atom Atom Distance (A) Cd CE B:Lys91 4.80 Cd NE2 M:His39 2.34 Cd ND1 M:His39 4.41 Cd CD2 M:His39 3.34 Cd CE1 M:His39 3.27 Cd CG M:His39 4.48 Cd CD M:Arg62 4.88 Cd NH1 M:Arg62 4.36 Cd CG N:Glu15 4.85 Cd O B:Hoh3033 4.58 Cd O B:Hoh3047 4.80 Cd O M:Hoh5014 2.46 Cd O M:Hoh5025 2.57 Cd O M:Hoh5101 2.45 Cd O N:Hoh5042 4.68 interactive model: Cadmium binding site 15 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: O: Glu15, O: Glu84, U: His39, U: Arg62, O: Hoh2053, O: Hoh2076, U: Hoh2027, conact list: Atom Atom Distance (A) Cd CG O:Glu15 4.25 Cd OE1 O:Glu84 2.42 Cd OE2 O:Glu84 2.62 Cd CD O:Glu84 2.84 Cd CG O:Glu84 4.32 Cd NE2 U:His39 2.23 Cd ND1 U:His39 4.36 Cd CD2 U:His39 3.07 Cd CE1 U:His39 3.30 Cd CG U:His39 4.28 Cd CD U:Arg62 4.98 Cd CZ U:Arg62 4.89 Cd NE U:Arg62 4.13 Cd NH2 U:Arg62 4.66 Cd O O:Hoh2053 4.21 Cd O O:Hoh2076 4.72 Cd O U:Hoh2027 2.54 interactive model: Cadmium binding site 16 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: O: His39, O: Arg62, P: Glu15, P: Glu84, O: Hoh2023, O: Hoh2079, P: Hoh2051, P: Hoh2057, conact list: Atom Atom Distance (A) Cd NE2 O:His39 2.40 Cd ND1 O:His39 4.53 Cd CD2 O:His39 3.06 Cd CE1 O:His39 3.57 Cd CG O:His39 4.33 Cd CZ O:Arg62 4.65 Cd NE O:Arg62 4.03 Cd NH2 O:Arg62 4.27 Cd OE1 P:Glu15 4.36 Cd CB P:Glu15 4.94 Cd OE1 P:Glu84 2.73 Cd OE2 P:Glu84 2.99 Cd CD P:Glu84 2.89 Cd CG P:Glu84 3.88 Cd O O:Hoh2023 2.63 Cd O O:Hoh2079 2.42 Cd O P:Hoh2051 4.32 Cd O P:Hoh2057 2.55 interactive model: Cadmium binding site 17 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: P: His39, P: Arg62, Q: Glu15, Q: Glu84, P: Hoh2025, Q: Hoh2027, Q: Hoh2046, Q: Hoh2078, conact list: Atom Atom Distance (A) Cd NE2 P:His39 2.16 Cd ND1 P:His39 4.21 Cd CD2 P:His39 3.21 Cd CE1 P:His39 3.06 Cd CG P:His39 4.32 Cd CD P:Arg62 4.92 Cd CZ P:Arg62 4.91 Cd NE P:Arg62 4.11 Cd NH2 P:Arg62 4.72 Cd OE1 Q:Glu15 4.60 Cd CD Q:Glu15 4.99 Cd CG Q:Glu15 4.21 Cd OE1 Q:Glu84 2.65 Cd OE2 Q:Glu84 2.35 Cd CD Q:Glu84 2.81 Cd CG Q:Glu84 4.32 Cd O P:Hoh2025 2.61 Cd O Q:Hoh2027 2.57 Cd O Q:Hoh2046 4.98 Cd O Q:Hoh2078 3.89 interactive model: Cadmium binding site 18 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: Q: His39, Q: Arg62, R: Glu15, R: Glu84, Q: Hoh2018, R: Hoh4026, R: Hoh4039, conact list: Atom Atom Distance (A) Cd NE2 Q:His39 2.27 Cd ND1 Q:His39 4.35 Cd CD2 Q:His39 3.24 Cd CE1 Q:His39 3.23 Cd CG Q:His39 4.38 Cd CD Q:Arg62 5.00 Cd CZ Q:Arg62 4.69 Cd NE Q:Arg62 4.04 Cd NH2 Q:Arg62 4.35 Cd OE2 R:Glu15 4.68 Cd CD R:Glu15 4.99 Cd CG R:Glu15 4.17 Cd OE1 R:Glu84 2.46 Cd OE2 R:Glu84 2.53 Cd CD R:Glu84 2.74 Cd CG R:Glu84 4.15 Cd O Q:Hoh2018 2.59 Cd O R:Hoh4026 2.48 Cd O R:Hoh4039 3.97 interactive model: Cadmium binding site 19 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: R: His39, R: Arg62, S: Glu15, S: Glu84, R: Hoh4013, R: Hoh4050, S: Hoh3053, conact list: Atom Atom Distance (A) Cd NE2 R:His39 2.16 Cd ND1 R:His39 4.28 Cd CD2 R:His39 3.06 Cd CE1 R:His39 3.20 Cd CG R:His39 4.24 Cd CZ R:Arg62 4.87 Cd NE R:Arg62 4.18 Cd NH2 R:Arg62 4.51 Cd CG S:Glu15 4.38 Cd OE1 S:Glu84 2.54 Cd OE2 S:Glu84 2.40 Cd CD S:Glu84 2.79 Cd CG S:Glu84 4.31 Cd O R:Hoh4013 2.54 Cd O R:Hoh4050 2.57 Cd O S:Hoh3053 4.10 interactive model: Cadmium binding site 20 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: S: His39, S: Arg62, T: Glu15, T: Glu84, S: Hoh3023, S: Hoh3034, T: Hoh165, T: Hoh184, conact list: Atom Atom Distance (A) Cd NE2 S:His39 2.26 Cd ND1 S:His39 4.37 Cd CD2 S:His39 3.15 Cd CE1 S:His39 3.29 Cd CG S:His39 4.34 Cd CZ S:Arg62 4.94 Cd NE S:Arg62 4.17 Cd NH2 S:Arg62 4.74 Cd OE2 T:Glu15 4.87 Cd CG T:Glu15 4.14 Cd OE1 T:Glu84 2.60 Cd OE2 T:Glu84 2.18 Cd CD T:Glu84 2.71 Cd CG T:Glu84 4.22 Cd O S:Hoh3023 2.44 Cd O S:Hoh3034 2.49 Cd O T:Hoh165 4.33 Cd O T:Hoh184 2.44 interactive model: Cadmium binding site 21 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: T: His39, T: Arg62, U: Glu15, U: Glu84, T: Hoh142, T: Hoh153, U: Hoh2042, U: Hoh2055, U: Hoh2062, conact list: Atom Atom Distance (A) Cd NE2 T:His39 2.41 Cd ND1 T:His39 4.54 Cd CD2 T:His39 3.19 Cd CE1 T:His39 3.50 Cd CG T:His39 4.42 Cd CD T:Arg62 4.92 Cd CZ T:Arg62 4.67 Cd NE T:Arg62 4.00 Cd NH2 T:Arg62 4.35 Cd OE1 U:Glu15 4.71 Cd CG U:Glu15 4.15 Cd OE1 U:Glu84 2.30 Cd OE2 U:Glu84 2.58 Cd CD U:Glu84 2.77 Cd CG U:Glu84 4.31 Cd O T:Hoh142 2.48 Cd O T:Hoh153 2.49 Cd O U:Hoh2042 4.26 Cd O U:Hoh2055 4.44 Cd O U:Hoh2062 2.50 interactive model: Cadmium binding site 22 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 22 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: P: Lys91, V: His39, V: Arg62, W: Glu15, P: Hoh2026, V: Hoh5028, V: Hoh5041, V: Hoh5104, V: Hoh5113, V: Hoh5122, conact list: Atom Atom Distance (A) Cd NZ P:Lys91 4.84 Cd NE2 V:His39 2.39 Cd ND1 V:His39 4.53 Cd CD2 V:His39 3.13 Cd CE1 V:His39 3.52 Cd CG V:His39 4.37 Cd NE V:Arg62 4.89 Cd NH2 V:Arg62 4.39 Cd CG W:Glu15 4.76 Cd O P:Hoh2026 4.66 Cd O V:Hoh5028 2.62 Cd O V:Hoh5041 2.55 Cd O V:Hoh5104 4.51 Cd O V:Hoh5113 2.97 Cd O V:Hoh5122 2.11 interactive model: Cadmium binding site 23 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 23 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: W: His39, W: Arg62, X: Glu15, O: Hoh2028, O: Hoh2057, W: Hoh5056, W: Hoh5057, W: Hoh5076, W: Hoh5081, conact list: Atom Atom Distance (A) Cd NE2 W:His39 2.36 Cd ND1 W:His39 4.48 Cd CD2 W:His39 3.21 Cd CE1 W:His39 3.42 Cd CG W:His39 4.41 Cd CD W:Arg62 4.90 Cd NH1 W:Arg62 4.29 Cd CG X:Glu15 4.77 Cd O O:Hoh2028 3.87 Cd O O:Hoh2057 4.31 Cd O W:Hoh5056 2.67 Cd O W:Hoh5057 2.40 Cd O W:Hoh5076 2.76 Cd O W:Hoh5081 1.91 interactive model: Cadmium binding site 24 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 24 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: U: Lys91, X: His39, X: Arg62, Y: Glu15, U: Hoh2045, U: Hoh2071, X: Hoh5036, X: Hoh5038, X: Hoh5070, X: Hoh5095, conact list: Atom Atom Distance (A) Cd CE U:Lys91 4.56 Cd NE2 X:His39 2.33 Cd ND1 X:His39 4.46 Cd CD2 X:His39 3.15 Cd CE1 X:His39 3.41 Cd CG X:His39 4.37 Cd CD X:Arg62 4.89 Cd NH1 X:Arg62 4.47 Cd OE2 Y:Glu15 4.85 Cd CG Y:Glu15 4.50 Cd O U:Hoh2045 4.55 Cd O U:Hoh2071 4.84 Cd O X:Hoh5036 2.51 Cd O X:Hoh5038 3.20 Cd O X:Hoh5070 2.69 Cd O X:Hoh5095 1.93 interactive model: Cadmium binding site 25 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 25 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: T: Lys91, Y: His39, Y: Arg62, Z: Glu15, T: Hoh158, Y: Hoh5085, Z: Hoh5060, Z: Hoh5069, conact list: Atom Atom Distance (A) Cd CE T:Lys91 4.46 Cd NE2 Y:His39 2.25 Cd ND1 Y:His39 4.38 Cd CD2 Y:His39 3.12 Cd CE1 Y:His39 3.31 Cd CG Y:His39 4.32 Cd CD Y:Arg62 4.77 Cd NH1 Y:Arg62 4.27 Cd OE1 Z:Glu15 2.91 Cd OE2 Z:Glu15 2.61 Cd CD Z:Glu15 2.87 Cd CG Z:Glu15 4.02 Cd O T:Hoh158 4.36 Cd O Y:Hoh5085 2.58 Cd O Z:Hoh5060 1.94 Cd O Z:Hoh5069 5.00 interactive model: Cadmium binding site 26 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 26 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: Z: His39, Z: Arg62, 1: Glu15, S: Hoh3012, Z: Hoh5031, Z: Hoh5042, Z: Hoh5057, conact list: Atom Atom Distance (A) Cd NE2 Z:His39 2.32 Cd ND1 Z:His39 4.45 Cd CD2 Z:His39 3.18 Cd CE1 Z:His39 3.39 Cd CG Z:His39 4.39 Cd CD Z:Arg62 4.79 Cd NH1 Z:Arg62 4.28 Cd CG 1:Glu15 4.78 Cd O S:Hoh3012 4.54 Cd O Z:Hoh5031 2.56 Cd O Z:Hoh5042 2.59 Cd O Z:Hoh5057 2.56 interactive model: Cadmium binding site 27 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 27 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: 1: His39, 1: Arg62, 2: Glu15, R: Gol4007, R: Hoh4021, conact list: Atom Atom Distance (A) Cd NE2 1:His39 2.35 Cd ND1 1:His39 4.47 Cd CD2 1:His39 3.25 Cd CE1 1:His39 3.38 Cd CG 1:His39 4.44 Cd CD 1:Arg62 4.84 Cd NH1 1:Arg62 4.21 Cd OE1 2:Glu15 2.71 Cd OE2 2:Glu15 3.30 Cd CD 2:Glu15 3.15 Cd CG 2:Glu15 4.30 Cd O1 R:Gol4007 4.63 Cd O R:Hoh4021 2.63 interactive model: Cadmium binding site 28 out of 28 in 1m5q Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 28 of Cadmium in the PDB 1m5q. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: V: Glu15, 2: His39, 2: Arg62, Q: Hoh2031, Q: Hoh2034, Q: Hoh2061, 2: Hoh5049, conact list: Atom Atom Distance (A) Cd OE1 V:Glu15 2.69 Cd OE2 V:Glu15 3.62 Cd CD V:Glu15 3.23 Cd CG V:Glu15 4.17 Cd NE2 2:His39 2.33 Cd ND1 2:His39 4.43 Cd CD2 2:His39 3.23 Cd CE1 2:His39 3.34 Cd CG 2:His39 4.41 Cd NH1 2:Arg62 4.54 Cd O Q:Hoh2031 4.56 Cd O Q:Hoh2034 2.83 Cd O Q:Hoh2061 4.64 Cd O 2:Hoh5049 2.69 interactive model: