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Cadmium in PDB 1mhu: The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy

Cadmium Binding Sites:

The binding sites of Cadmium atom in the The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy (pdb code 1mhu). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy, PDB code: 1mhu:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in 1mhu

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Cadmium binding site 1 out of 4 in the The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd101

b:1.0
occ:1.00
SG A:CYS60 2.5 1.4 1.0
SG A:CYS57 2.6 1.2 1.0
SG A:CYS59 2.6 1.7 1.0
SG A:CYS50 2.7 0.6 1.0
H A:CYS59 2.7 1.1 1.0
HB2 A:CYS57 3.0 0.8 1.0
HB2 A:CYS60 3.0 1.2 1.0
H A:CYS60 3.1 1.4 1.0
N A:CYS60 3.1 1.4 1.0
HA A:CYS50 3.1 0.6 1.0
HB2 A:CYS50 3.2 1.2 1.0
CB A:CYS60 3.2 1.4 1.0
CB A:CYS57 3.3 0.9 1.0
C A:CYS59 3.3 1.3 1.0
CB A:CYS50 3.4 0.8 1.0
CB A:CYS59 3.4 1.0 1.0
HB2 A:CYS59 3.4 1.2 1.0
N A:CYS59 3.5 1.3 1.0
CA A:CYS59 3.5 1.2 1.0
HB3 A:CYS57 3.6 0.8 1.0
H A:SER58 3.7 1.7 1.0
CA A:CYS60 3.8 1.6 1.0
CA A:CYS50 3.8 0.6 1.0
O A:CYS59 3.9 1.4 1.0
H A:GLY52 4.1 3.6 1.0
SG A:CYS37 4.1 1.7 1.0
HB3 A:CYS60 4.2 1.6 1.0
H A:LYS51 4.3 1.7 1.0
CD A:CD107 4.3 0.9 1.0
CD A:CD106 4.3 1.4 1.0
N A:SER58 4.4 1.6 1.0
HB3 A:CYS50 4.4 1.2 1.0
HB3 A:CYS59 4.4 1.6 1.0
HA A:CYS60 4.5 1.9 1.0
SG A:CYS36 4.6 3.2 1.0
HA3 A:GLY52 4.6 5.6 1.0
HA A:CYS59 4.6 1.4 1.0
CA A:CYS57 4.6 1.2 1.0
C A:SER58 4.7 1.7 1.0
C A:CYS50 4.7 0.8 1.0
N A:LYS51 4.8 0.9 1.0
C A:CYS60 4.8 1.9 1.0
HB3 A:LYS43 4.9 3.4 1.0
N A:CYS50 4.9 0.6 1.0
C A:CYS57 4.9 1.5 1.0
N A:GLY52 4.9 2.9 1.0

Cadmium binding site 2 out of 4 in 1mhu

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Cadmium binding site 2 out of 4 in the The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd105

b:1.0
occ:1.00
SG A:CYS34 2.5 1.1 1.0
SG A:CYS33 2.6 1.4 1.0
SG A:CYS48 2.7 1.6 1.0
SG A:CYS44 2.7 1.7 1.0
HB3 A:CYS44 2.9 1.7 1.0
HA A:CYS48 3.0 0.6 1.0
HB3 A:CYS33 3.0 1.2 1.0
HB3 A:CYS50 3.0 1.2 1.0
HB3 A:CYS34 3.2 1.1 1.0
HB2 A:CYS48 3.3 1.4 1.0
CB A:CYS33 3.4 1.3 1.0
CB A:CYS44 3.4 1.1 1.0
CB A:CYS48 3.4 1.0 1.0
CB A:CYS34 3.4 1.1 1.0
HB2 A:CYS50 3.7 1.2 1.0
CA A:CYS48 3.7 0.7 1.0
C A:CYS33 3.8 0.9 1.0
H A:CYS50 3.8 0.5 1.0
N A:CYS34 3.9 0.9 1.0
CB A:CYS50 3.9 0.8 1.0
O A:CYS33 4.0 1.1 1.0
HB2 A:CYS44 4.0 2.2 1.0
H A:CYS34 4.1 1.0 1.0
CA A:CYS33 4.2 0.9 1.0
HB2 A:CYS37 4.2 1.5 1.0
CD A:CD107 4.2 0.9 1.0
CA A:CYS34 4.2 0.9 1.0
HB2 A:CYS33 4.3 1.6 1.0
HB2 A:CYS34 4.3 1.1 1.0
HA A:CYS44 4.4 0.9 1.0
O A:GLY47 4.4 1.6 1.0
HB3 A:CYS48 4.4 1.1 1.0
C A:CYS48 4.5 0.7 1.0
CD A:CD106 4.5 1.4 1.0
CA A:CYS44 4.5 0.9 1.0
N A:CYS50 4.6 0.6 1.0
H A:ILE49 4.7 0.7 1.0
HA A:CYS34 4.7 1.0 1.0
HA A:CYS33 4.7 1.0 1.0
N A:ILE49 4.8 0.6 1.0
CA A:CYS50 4.8 0.6 1.0
N A:CYS48 4.9 0.6 1.0

Cadmium binding site 3 out of 4 in 1mhu

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Cadmium binding site 3 out of 4 in the The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd106

b:1.4
occ:1.00
SG A:CYS44 2.4 1.7 1.0
SG A:CYS37 2.6 1.7 1.0
SG A:CYS41 2.7 2.8 1.0
SG A:CYS60 2.7 1.4 1.0
HB2 A:CYS44 3.0 2.2 1.0
HB2 A:LYS43 3.1 3.4 1.0
HB3 A:CYS41 3.1 1.9 1.0
HB2 A:CYS50 3.1 1.2 1.0
HB3 A:CYS60 3.2 1.6 1.0
HB3 A:CYS37 3.3 1.7 1.0
CB A:CYS44 3.3 1.1 1.0
CB A:CYS60 3.4 1.4 1.0
CB A:CYS37 3.4 1.0 1.0
CB A:CYS41 3.4 0.9 1.0
HB2 A:CYS37 3.5 1.5 1.0
HB2 A:CYS60 3.6 1.2 1.0
O A:LYS43 3.7 2.9 1.0
C A:LYS43 3.7 1.7 1.0
HB2 A:CYS41 3.8 2.4 1.0
CB A:LYS43 3.9 3.0 1.0
N A:CYS44 4.0 0.9 1.0
HB3 A:LYS43 4.0 3.4 1.0
HB3 A:CYS44 4.1 1.7 1.0
CB A:CYS50 4.2 0.8 1.0
CA A:CYS44 4.2 0.9 1.0
CD A:CD107 4.2 0.9 1.0
CA A:LYS43 4.3 1.9 1.0
CD A:CD101 4.3 1.0 1.0
H A:LYS43 4.4 1.3 1.0
H A:CYS44 4.4 1.5 1.0
CD A:CD105 4.5 1.0 1.0
SG A:CYS34 4.5 1.1 1.0
HB3 A:CYS50 4.5 1.2 1.0
HA A:CYS44 4.6 0.9 1.0
N A:LYS43 4.7 1.0 1.0
CA A:CYS41 4.8 1.1 1.0
HD2 A:PRO38 4.8 1.2 1.0
CA A:CYS60 4.8 1.6 1.0
CA A:CYS37 4.8 0.9 1.0
SG A:CYS50 4.8 0.6 1.0
O A:CYS41 4.9 2.5 1.0
HG13 A:ILE49 5.0 3.5 1.0

Cadmium binding site 4 out of 4 in 1mhu

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Cadmium binding site 4 out of 4 in the The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of The Three-Dimensional Structure of Human [113CD7] Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd107

b:0.9
occ:1.00
SG A:CYS36 2.5 3.2 1.0
SG A:CYS34 2.5 1.1 1.0
SG A:CYS50 2.7 0.6 1.0
SG A:CYS37 2.7 1.7 1.0
H A:CYS37 2.8 1.0 1.0
HB2 A:CYS34 3.0 1.1 1.0
HB3 A:CYS36 3.0 1.4 1.0
HB3 A:CYS50 3.2 1.2 1.0
HB2 A:CYS37 3.2 1.5 1.0
N A:CYS37 3.2 0.9 1.0
CB A:CYS50 3.3 0.8 1.0
CB A:CYS36 3.3 1.4 1.0
CB A:CYS34 3.3 1.1 1.0
HB2 A:CYS50 3.3 1.2 1.0
CB A:CYS37 3.4 1.0 1.0
H A:CYS36 3.6 1.1 1.0
HB3 A:CYS34 3.8 1.1 1.0
C A:CYS36 3.8 1.4 1.0
CA A:CYS37 3.9 0.9 1.0
CA A:CYS36 3.9 1.2 1.0
HB3 A:CYS57 4.1 0.8 1.0
N A:CYS36 4.1 1.1 1.0
CD A:CD105 4.2 1.0 1.0
CD A:CD106 4.2 1.4 1.0
HB2 A:CYS36 4.2 1.5 1.0
CD A:CD101 4.3 1.0 1.0
HA A:CYS37 4.3 1.1 1.0
HB3 A:CYS37 4.4 1.7 1.0
CA A:CYS34 4.6 0.9 1.0
SG A:CYS44 4.7 1.7 1.0
O A:ALA53 4.7 3.6 1.0
O A:CYS36 4.7 2.2 1.0
CA A:CYS50 4.8 0.6 1.0
HB2 A:CYS60 4.8 1.2 1.0
C A:CYS34 4.9 1.0 1.0
SG A:CYS57 4.9 1.2 1.0
CB A:CYS57 4.9 0.9 1.0
HA A:CYS36 5.0 1.2 1.0
HA A:SER54 5.0 3.8 1.0

Reference:

B.A.Messerle, A.Schaffer, M.Vasak, J.H.Kagi, K.Wuthrich. Three-Dimensional Structure of Human [113CD7]Metallothionein-2 in Solution Determined By Nuclear Magnetic Resonance Spectroscopy. J.Mol.Biol. V. 214 765 1990.
ISSN: ISSN 0022-2836
PubMed: 2388267
DOI: 10.1016/0022-2836(90)90291-S
Page generated: Fri Aug 28 12:11:41 2020
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