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Cadmium in PDB 1mpa: Bactericidal Antibody Against Neisseria Meningitidis

Protein crystallography data

The structure of Bactericidal Antibody Against Neisseria Meningitidis, PDB code: 1mpa was solved by J.M.H.Van Den Elsen, J.N.Herron, J.Kroon, P.Gros, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.680, 69.100, 72.950, 90.00, 112.01, 90.00
R / Rfree (%) 19.4 / 30.9

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Bactericidal Antibody Against Neisseria Meningitidis (pdb code 1mpa). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Bactericidal Antibody Against Neisseria Meningitidis, PDB code: 1mpa:

Cadmium binding site 1 out of 1 in 1mpa

Go back to Cadmium Binding Sites List in 1mpa
Cadmium binding site 1 out of 1 in the Bactericidal Antibody Against Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Bactericidal Antibody Against Neisseria Meningitidis within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cd220

b:54.2
occ:1.00
O L:HOH224 2.2 27.4 1.0
O L:HOH222 2.5 26.3 1.0
HD1 L:HIS98 2.6 5.0 1.0
H1 L:HOH224 2.9 5.0 1.0
ND1 L:HIS98 3.1 21.1 1.0
H2 L:HOH224 3.1 5.0 1.0
H2 L:HOH222 3.3 5.0 1.0
H1 L:HOH222 3.3 5.0 1.0
CE1 L:HIS98 3.9 25.5 1.0
CG L:HIS98 3.9 22.1 1.0
H L:VAL99 4.1 5.0 1.0
CB L:HIS98 4.2 21.2 1.0
HE22 L:GLN27 4.4 5.0 1.0
CA L:HIS98 4.5 13.9 1.0
NE2 L:GLN27 4.9 51.3 1.0
NE2 L:HIS98 5.0 19.3 1.0

Reference:

J.M.Van Den Elsen, J.N.Herron, P.Hoogerhout, J.T.Poolman, E.Boel, T.Logtenberg, J.Wilting, D.J.Crommelin, J.Kroon, P.Gros. Bactericidal Antibody Recognition of A Pora Epitope of Neisseria Meningitidis: Crystal Structure of A Fab Fragment in Complex with A Fluorescein-Conjugated Peptide. Proteins V. 29 113 1997.
ISSN: ISSN 0887-3585
PubMed: 9294871
DOI: 10.1002/(SICI)1097-0134(199709)29:1<113::AID-PROT9>3.3.CO;2-U
Page generated: Fri Aug 28 12:12:50 2020
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