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Cadmium in PDB 1mrb: Three-Dimensional Structure of Rabbit Liver CD7 Metallothionein-2A in Aqueous Solution Determined By Nuclear Magnetic Resonance

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Three-Dimensional Structure of Rabbit Liver CD7 Metallothionein-2A in Aqueous Solution Determined By Nuclear Magnetic Resonance (pdb code 1mrb). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Three-Dimensional Structure of Rabbit Liver CD7 Metallothionein-2A in Aqueous Solution Determined By Nuclear Magnetic Resonance, PDB code: 1mrb:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in 1mrb

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Cadmium binding site 1 out of 4 in the Three-Dimensional Structure of Rabbit Liver CD7 Metallothionein-2A in Aqueous Solution Determined By Nuclear Magnetic Resonance


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Three-Dimensional Structure of Rabbit Liver CD7 Metallothionein-2A in Aqueous Solution Determined By Nuclear Magnetic Resonance within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd101

b:1.2
occ:1.00
SG A:CYS59 2.5 1.2 1.0
SG A:CYS57 2.5 2.1 1.0
SG A:CYS50 2.5 2.0 1.0
SG A:CYS60 2.6 1.4 1.0
H A:CYS59 2.9 1.3 1.0
H A:CYS60 3.1 0.9 1.0
CD1 A:ILE49 3.2 1.8 1.0
N A:CYS60 3.2 1.1 1.0
CB A:CYS59 3.2 1.8 1.0
CB A:CYS50 3.3 1.1 1.0
HA A:CYS50 3.3 1.1 1.0
CB A:CYS57 3.3 1.1 1.0
CB A:CYS60 3.3 1.1 1.0
C A:CYS59 3.4 1.4 1.0
CA A:CYS59 3.6 1.4 1.0
N A:CYS59 3.6 1.2 1.0
CA A:CYS50 3.7 1.1 1.0
CA A:CYS60 3.8 1.2 1.0
N A:CYS50 3.9 1.1 1.0
H A:CYS50 4.0 1.1 1.0
H A:SER58 4.0 1.6 1.0
O A:CYS59 4.1 1.7 1.0
CG1 A:ILE49 4.1 1.8 1.0
CD A:CD107 4.1 1.1 1.0
CD A:CD106 4.2 1.1 1.0
SG A:CYS37 4.2 1.3 1.0
C A:ILE49 4.5 1.2 1.0
HA A:CYS60 4.6 1.7 1.0
N A:SER58 4.6 1.3 1.0
HA A:CYS59 4.6 1.6 1.0
CA A:CYS57 4.7 1.1 1.0
SG A:CYS44 4.7 0.9 1.0
H A:ILE49 4.8 1.1 1.0
O A:LYS43 4.8 1.6 1.0
C A:SER58 4.9 1.2 1.0
C A:CYS60 4.9 1.5 1.0
O A:ILE49 4.9 1.4 1.0

Cadmium binding site 2 out of 4 in 1mrb

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Cadmium binding site 2 out of 4 in the Three-Dimensional Structure of Rabbit Liver CD7 Metallothionein-2A in Aqueous Solution Determined By Nuclear Magnetic Resonance


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Three-Dimensional Structure of Rabbit Liver CD7 Metallothionein-2A in Aqueous Solution Determined By Nuclear Magnetic Resonance within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd105

b:1.1
occ:1.00
SG A:CYS48 2.5 1.4 1.0
SG A:CYS33 2.5 1.5 1.0
SG A:CYS44 2.5 0.9 1.0
SG A:CYS34 2.6 1.4 1.0
HA A:CYS48 3.2 0.9 1.0
CB A:CYS48 3.2 1.3 1.0
CB A:CYS34 3.3 1.0 1.0
CB A:CYS33 3.3 1.4 1.0
CB A:CYS44 3.4 0.8 1.0
C A:CYS33 3.6 0.8 1.0
N A:CYS34 3.7 0.8 1.0
SG A:CYS50 3.8 2.0 1.0
CA A:CYS48 3.8 1.1 1.0
O A:CYS33 3.9 1.0 1.0
H A:CYS34 4.0 1.1 1.0
CA A:CYS33 4.0 1.0 1.0
CA A:CYS34 4.1 0.9 1.0
CD A:CD107 4.2 1.1 1.0
H A:CYS50 4.3 1.1 1.0
CD A:CD106 4.4 1.1 1.0
H A:ILE49 4.5 1.1 1.0
CA A:CYS44 4.7 0.6 1.0
HA A:CYS44 4.7 0.7 1.0
N A:CYS33 4.7 0.8 1.0
HA A:CYS34 4.8 1.0 1.0
CB A:CYS50 4.8 1.1 1.0
CB A:CYS37 4.8 1.2 1.0
N A:CYS48 4.8 1.4 1.0
C A:CYS48 4.8 1.1 1.0
H A:CYS48 4.9 1.5 1.0
HA A:CYS33 4.9 1.3 1.0
N A:ILE49 5.0 1.1 1.0

Cadmium binding site 3 out of 4 in 1mrb

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Cadmium binding site 3 out of 4 in the Three-Dimensional Structure of Rabbit Liver CD7 Metallothionein-2A in Aqueous Solution Determined By Nuclear Magnetic Resonance


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Three-Dimensional Structure of Rabbit Liver CD7 Metallothionein-2A in Aqueous Solution Determined By Nuclear Magnetic Resonance within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd106

b:1.1
occ:1.00
SG A:CYS41 2.5 1.9 1.0
SG A:CYS60 2.5 1.4 1.0
SG A:CYS44 2.6 0.9 1.0
SG A:CYS37 2.7 1.3 1.0
CB A:CYS37 3.1 1.2 1.0
CB A:CYS44 3.3 0.8 1.0
CB A:CYS60 3.3 1.1 1.0
CB A:CYS41 3.4 1.2 1.0
C A:LYS43 3.5 0.9 1.0
O A:LYS43 3.5 1.6 1.0
H A:LYS43 3.7 1.1 1.0
N A:CYS44 3.8 0.7 1.0
SG A:CYS50 3.8 2.0 1.0
CB A:LYS43 4.0 1.1 1.0
CA A:LYS43 4.1 0.9 1.0
CA A:CYS44 4.1 0.6 1.0
CD A:CD107 4.1 1.1 1.0
CD A:CD101 4.2 1.2 1.0
N A:LYS43 4.2 0.9 1.0
H A:CYS44 4.2 1.3 1.0
HA A:CYS44 4.4 0.7 1.0
CD A:CD105 4.4 1.1 1.0
CA A:CYS37 4.6 1.1 1.0
SG A:CYS34 4.7 1.4 1.0
CA A:CYS41 4.8 1.2 1.0
CD1 A:ILE49 4.8 1.8 1.0
CA A:CYS60 4.8 1.2 1.0

Cadmium binding site 4 out of 4 in 1mrb

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Cadmium binding site 4 out of 4 in the Three-Dimensional Structure of Rabbit Liver CD7 Metallothionein-2A in Aqueous Solution Determined By Nuclear Magnetic Resonance


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Three-Dimensional Structure of Rabbit Liver CD7 Metallothionein-2A in Aqueous Solution Determined By Nuclear Magnetic Resonance within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd107

b:1.1
occ:1.00
SG A:CYS37 2.4 1.3 1.0
SG A:CYS36 2.4 1.6 1.0
SG A:CYS34 2.5 1.4 1.0
SG A:CYS50 2.7 2.0 1.0
H A:CYS36 3.0 1.1 1.0
H A:CYS37 3.1 1.4 1.0
N A:CYS37 3.1 1.2 1.0
CB A:CYS37 3.2 1.2 1.0
CB A:CYS36 3.2 1.2 1.0
C A:CYS36 3.3 1.2 1.0
CB A:CYS34 3.4 1.0 1.0
CB A:CYS50 3.4 1.1 1.0
CA A:CYS36 3.6 1.2 1.0
N A:CYS36 3.7 1.2 1.0
CA A:CYS37 3.7 1.1 1.0
O A:CYS36 4.0 1.5 1.0
CD A:CD106 4.1 1.1 1.0
CD A:CD101 4.1 1.2 1.0
SG A:CYS57 4.2 2.1 1.0
CD A:CD105 4.2 1.1 1.0
HA A:CYS37 4.4 1.2 1.0
H A:SER35 4.5 1.6 1.0
CB A:CYS57 4.5 1.1 1.0
SG A:CYS44 4.5 0.9 1.0
HA A:CYS36 4.6 1.4 1.0
CA A:CYS34 4.7 0.9 1.0
N A:SER35 4.8 1.3 1.0
C A:CYS37 4.8 1.1 1.0
O A:CYS37 4.8 1.2 1.0
CA A:CYS50 4.9 1.1 1.0
SG A:CYS60 4.9 1.4 1.0
C A:CYS34 5.0 1.0 1.0
C A:SER35 5.0 1.6 1.0

Reference:

A.Arseniev, P.Schultze, E.Worgotter, W.Braun, G.Wagner, M.Vasak, J.H.Kagi, K.Wuthrich. Three-Dimensional Structure of Rabbit Liver [CD7]Metallothionein-2A in Aqueous Solution Determined By Nuclear Magnetic Resonance. J.Mol.Biol. V. 201 637 1988.
ISSN: ISSN 0022-2836
PubMed: 3418714
DOI: 10.1016/0022-2836(88)90644-4
Page generated: Sat Dec 12 08:11:11 2020

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