Cadmium in PDB 1mup: Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography

The structure of Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography, PDB code: 1mup was solved by Z.Bocskei, D.R.Flower, C.R.Groom, S.E.V.Phillips, A.C.T.North, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.00 / 2.40
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	57.300, 57.300, 110.000, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Cadmium atom in the Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography (pdb code 1mup). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography, PDB code: 1mup:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in the Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd201 b:20.4 occ:1.00 NE2 A:GLN119 2.1 60.0 1.0 OE1 A:GLN119 2.1 47.1 1.0 CD A:GLN119 2.5 41.6 1.0 ND1 A:HIS145 2.5 19.4 1.0 NE2 A:HIS108 2.7 18.0 1.0 CG A:HIS145 3.4 18.0 1.0 CE1 A:HIS145 3.5 24.7 1.0 CD2 A:HIS108 3.6 18.0 1.0 CB A:HIS145 3.6 18.0 1.0 CE1 A:HIS108 3.6 18.0 1.0 CG A:GLN119 3.9 34.0 1.0 O A:HIS145 4.2 40.1 1.0 CA A:HIS145 4.4 18.0 1.0 CD2 A:HIS145 4.6 19.8 1.0 NE2 A:HIS145 4.6 24.8 1.0 CG A:HIS108 4.6 18.0 1.0 ND1 A:HIS108 4.6 18.0 1.0 CB A:GLN119 4.8 18.0 1.0 C A:HIS145 4.8 18.0 1.0

Cadmium binding site 2 out of 4 in the Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:35.0 occ:0.87 O A:HOH355 2.0 50.6 1.0 O A:HOH354 2.0 19.8 1.0 OE1 A:GLU22 2.5 39.9 1.0 OE2 A:GLU22 2.8 60.0 1.0 O A:HOH360 2.9 48.6 1.0 CD A:GLU22 3.0 43.4 1.0 CG A:GLU22 4.5 40.9 1.0 O A:ARG126 4.5 38.1 1.0 NE2 A:HIS24 4.6 18.0 1.0 OE2 A:GLU127 4.6 60.0 1.0 O A:HOH328 4.7 40.0 1.0

Cadmium binding site 3 out of 4 in the Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd203 b:36.0 occ:0.40 OD2 A:ASP65 2.0 60.0 1.0 O A:HOH346 2.3 41.5 1.0 CG A:ASP65 2.9 60.0 1.0 OD1 A:ASP65 3.1 60.0 1.0 CB A:ASP65 4.3 60.0 1.0

Cadmium binding site 4 out of 4 in the Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd204 b:18.0 occ:0.19 OE2 A:GLU70 2.0 60.0 1.0 OE2 A:GLU47 2.2 23.0 1.0 OE1 A:GLU70 2.2 55.3 1.0 CD A:GLU70 2.3 52.1 1.0 OE1 A:GLU47 2.3 51.5 1.0 CD A:GLU47 2.5 41.5 1.0 CG A:GLU70 3.7 39.7 1.0 CG A:GLU47 3.8 20.1 1.0 ND1 A:HIS61 4.4 21.4 1.0 O A:HOH366 4.5 49.4 1.0 O A:HOH330 4.6 50.8 1.0 CB A:HIS61 4.7 19.0 1.0 CB A:GLU47 4.9 18.0 1.0 CG A:HIS61 4.9 21.8 1.0 CB A:GLU70 5.0 18.2 1.0

Z.Bocskei, C.R.Groom, D.R.Flower, C.E.Wright, S.E.Phillips, A.Cavaggioni, J.B.Findlay, A.C.North. Pheromone Binding to Two Rodent Urinary Proteins Revealed By X-Ray Crystallography. Nature V. 360 186 1992.
ISSN: ISSN 0028-0836
PubMed: 1279439
DOI: 10.1038/360186A0