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Cadmium in PDB 1mwr: Structure of Semet Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R (Trigonal Form) at 2.45 A Resolution.

Protein crystallography data

The structure of Structure of Semet Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R (Trigonal Form) at 2.45 A Resolution., PDB code: 1mwr was solved by D.C.Lim, N.C.J.Strynadka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.89 / 2.45
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 141.060, 141.060, 146.671, 90.00, 90.00, 120.00
R / Rfree (%) 27 / 32.4

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Structure of Semet Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R (Trigonal Form) at 2.45 A Resolution. (pdb code 1mwr). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Structure of Semet Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R (Trigonal Form) at 2.45 A Resolution., PDB code: 1mwr:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in 1mwr

Go back to Cadmium Binding Sites List in 1mwr
Cadmium binding site 1 out of 4 in the Structure of Semet Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R (Trigonal Form) at 2.45 A Resolution.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of Semet Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R (Trigonal Form) at 2.45 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1202

b:17.4
occ:1.00
OD2 B:ASP209 2.1 5.7 1.0
O A:GLY135 2.2 10.4 1.0
OD1 B:ASP209 2.3 2.4 1.0
NE2 A:HIS311 2.3 12.1 1.0
CG B:ASP209 2.5 9.1 1.0
CL A:CL1205 2.6 16.4 1.0
CD2 A:HIS311 3.2 7.4 1.0
C A:GLY135 3.2 14.4 1.0
CE1 A:HIS311 3.4 7.1 1.0
CA A:GLY135 3.6 14.5 1.0
NE2 A:GLN137 4.0 17.6 1.0
CB B:ASP209 4.0 10.2 1.0
CG A:GLN137 4.2 20.5 1.0
N A:MSE136 4.4 13.8 1.0
CG A:HIS311 4.4 11.1 1.0
CD A:GLN137 4.4 19.7 1.0
ND1 A:HIS311 4.4 11.8 1.0
CB B:GLN207 4.8 23.7 1.0
CA A:MSE136 4.9 16.3 1.0
C A:MSE136 4.9 17.6 1.0
CA B:ASP209 4.9 17.3 1.0
O A:MSE136 4.9 18.5 1.0
C B:ASP209 4.9 18.1 1.0
NH2 A:ARG110 5.0 28.9 1.0

Cadmium binding site 2 out of 4 in 1mwr

Go back to Cadmium Binding Sites List in 1mwr
Cadmium binding site 2 out of 4 in the Structure of Semet Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R (Trigonal Form) at 2.45 A Resolution.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Structure of Semet Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R (Trigonal Form) at 2.45 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1203

b:21.4
occ:1.00
NE2 B:HIS311 2.2 22.6 1.0
O B:GLY135 2.3 15.5 1.0
OD2 A:ASP209 2.4 24.6 1.0
OD1 A:ASP209 2.4 26.0 1.0
CL B:CL1206 2.5 24.5 1.0
CG A:ASP209 2.7 26.4 1.0
CD2 B:HIS311 3.1 20.2 1.0
C B:GLY135 3.2 16.7 1.0
CE1 B:HIS311 3.3 21.6 1.0
CA B:GLY135 3.6 16.2 1.0
NE2 B:GLN137 4.0 31.0 1.0
CB A:ASP209 4.2 27.3 1.0
CG B:HIS311 4.3 19.2 1.0
ND1 B:HIS311 4.4 18.5 1.0
N B:MSE136 4.5 15.9 1.0
NH2 B:ARG110 4.8 40.2 1.0
CD B:GLN137 4.9 29.4 1.0
N B:GLY135 5.0 17.9 1.0
CA B:MSE136 5.0 18.5 1.0

Cadmium binding site 3 out of 4 in 1mwr

Go back to Cadmium Binding Sites List in 1mwr
Cadmium binding site 3 out of 4 in the Structure of Semet Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R (Trigonal Form) at 2.45 A Resolution.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Structure of Semet Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R (Trigonal Form) at 2.45 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd1201

b:20.0
occ:1.00
OE2 B:GLU145 2.0 12.1 1.0
ND1 B:HIS143 2.2 18.0 1.0
CL B:CL1208 2.4 10.4 1.0
CG A:GLU145 2.9 17.0 1.0
OE2 A:GLU145 2.9 1.7 1.0
CD B:GLU145 3.0 16.4 1.0
CE1 B:HIS143 3.0 17.4 1.0
CG B:HIS143 3.2 17.3 1.0
CD A:GLU145 3.3 3.4 1.0
CB B:HIS143 3.6 15.5 1.0
OE1 B:GLU145 3.7 17.4 1.0
CB A:GLU145 3.8 15.8 1.0
CG B:GLU145 4.0 14.3 1.0
NE2 B:HIS143 4.1 14.0 1.0
CD2 B:HIS143 4.2 16.6 1.0
CA A:GLU145 4.4 20.6 1.0
OE1 A:GLU145 4.4 1.7 1.0
ND1 A:HIS143 4.5 22.8 1.0
CG2 B:VAL302 4.6 14.1 1.0
NH2 B:ARG298 4.6 18.5 1.0
CG A:HIS143 4.9 20.0 1.0
O A:ILE144 5.0 17.3 1.0
CA B:HIS143 5.0 15.4 1.0

Cadmium binding site 4 out of 4 in 1mwr

Go back to Cadmium Binding Sites List in 1mwr
Cadmium binding site 4 out of 4 in the Structure of Semet Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R (Trigonal Form) at 2.45 A Resolution.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Structure of Semet Penicillin Binding Protein 2A From Methicillin Resistant Staphylococcus Aureus Strain 27R (Trigonal Form) at 2.45 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd1204

b:21.4
occ:1.00
OD2 B:ASP509 2.2 24.5 1.0
OE1 B:GLU480 2.3 19.4 1.0
OE2 B:GLU480 2.6 22.5 1.0
CD B:GLU480 2.7 21.8 1.0
OD1 B:ASP509 2.7 22.6 1.0
CG B:ASP509 2.8 26.6 1.0
CG B:GLU480 4.2 20.5 1.0
CB B:ASP509 4.3 27.8 1.0
N B:ASP509 4.8 33.1 1.0
CA B:ASP509 4.8 32.1 1.0
CB B:SER476 4.9 26.2 1.0

Reference:

D.Lim, N.C.Strynadka. Structural Basis For the Beta Lactam Resistance of PBP2A From Methicillin-Resistant Staphylococcus Aureus. Nat.Struct.Biol. V. 9 870 2002.
ISSN: ISSN 1072-8368
PubMed: 12389036
Page generated: Fri Aug 28 12:13:38 2020
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