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Cadmium in PDB 1qvg: Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui
Protein crystallography data
The structure of Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui, PDB code: 1qvg
was solved by
T.M.Schmeing,
P.B.Moore,
T.A.Steitz,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 50.00 / 2.90 |
| Space group | C 2 2 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 213.517, 300.612, 573.929, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 20.1 / 25.8 |
Other elements in 1qvg:
The structure of Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui also contains other interesting chemical elements:
| Magnesium | (Mg) | 116 atoms |
| Potassium | (K) | 2 atoms |
| Chlorine | (Cl) | 22 atoms |
| Sodium | (Na) | 86 atoms |
Cadmium Binding Sites:
The binding sites of Cadmium atom in the Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui
(pdb code 1qvg). This binding sites where shown within
5.0 Angstroms radius around Cadmium atom.
In total 5 binding sites of Cadmium where determined in the Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui, PDB code: 1qvg:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
In total 5 binding sites of Cadmium where determined in the Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui, PDB code: 1qvg:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
Cadmium binding site 1 out of 5 in 1qvg
Go back to
Cadmium Binding Sites List in 1qvg
Cadmium binding site 1 out
of 5 in the Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 1 of Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Cadmium binding site 2 out of 5 in 1qvg
Go back to
Cadmium Binding Sites List in 1qvg
Cadmium binding site 2 out
of 5 in the Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 2 of Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Cadmium binding site 3 out of 5 in 1qvg
Go back to
Cadmium Binding Sites List in 1qvg
Cadmium binding site 3 out
of 5 in the Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 3 of Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Cadmium binding site 4 out of 5 in 1qvg
Go back to
Cadmium Binding Sites List in 1qvg
Cadmium binding site 4 out
of 5 in the Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 4 of Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Cadmium binding site 5 out of 5 in 1qvg
Go back to
Cadmium Binding Sites List in 1qvg
Cadmium binding site 5 out
of 5 in the Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 5 of Structure of Cca Oligonucleotide Bound to the Trna Binding Sites of the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Reference:
T.M.Schmeing,
P.B.Moore,
T.A.Steitz.
Structures of Deacylated Trna Mimics Bound to the E Site of the Large Ribosomal Subunit Rna V. 9 1345 2003.
ISSN: ISSN 1355-8382
PubMed: 14561884
DOI: 10.1261/RNA.5120503
Page generated: Fri Jul 19 14:11:09 2024
ISSN: ISSN 1355-8382
PubMed: 14561884
DOI: 10.1261/RNA.5120503
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