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Cadmium in PDB 1r0i: Cadmium-Substituted Rubredoxin

Protein crystallography data

The structure of Cadmium-Substituted Rubredoxin, PDB code: 1r0i was solved by M.Maher, M.Cross, M.C.J.Wilce, J.M.Guss, A.G.Wedd, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.57 / 1.50
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 64.294, 64.294, 32.567, 90.00, 90.00, 120.00
R / Rfree (%) 14.6 / 14.6

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Cadmium-Substituted Rubredoxin (pdb code 1r0i). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Cadmium-Substituted Rubredoxin, PDB code: 1r0i:

Cadmium binding site 1 out of 1 in 1r0i

Go back to Cadmium Binding Sites List in 1r0i
Cadmium binding site 1 out of 1 in the Cadmium-Substituted Rubredoxin


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Cadmium-Substituted Rubredoxin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd101

b:15.9
occ:1.00
SG A:CYS42 2.5 15.2 1.0
SG A:CYS9 2.5 12.7 1.0
SG A:CYS6 2.5 12.4 1.0
SG A:CYS39 2.5 13.2 1.0
CB A:CYS6 3.3 12.3 1.0
CB A:CYS39 3.3 13.8 1.0
CB A:CYS9 3.4 12.6 1.0
CB A:CYS42 3.4 16.3 1.0
N A:CYS9 3.9 13.0 1.0
N A:CYS42 3.9 16.5 1.0
CA A:CYS9 4.2 12.4 1.0
CA A:CYS42 4.2 15.9 1.0
CG2 A:VAL44 4.2 16.1 1.0
CB A:TYR11 4.3 13.8 1.0
CA A:CYS6 4.8 12.5 1.0
CA A:CYS39 4.8 13.8 1.0
N A:GLY10 4.8 12.6 1.0
N A:TYR11 4.8 12.8 1.0
CB A:LEU41 4.8 17.1 0.5
C A:CYS42 4.8 15.9 1.0
C A:CYS9 4.8 12.6 1.0
CB A:LEU41 4.9 16.6 0.5
N A:GLY43 4.9 16.0 1.0
CB A:VAL8 4.9 14.6 1.0
C A:VAL8 5.0 13.7 1.0
CD1 A:LEU41 5.0 19.1 0.5
C A:LEU41 5.0 17.1 1.0

Reference:

M.Maher, M.Cross, M.C.Wilce, J.M.Guss, A.G.Wedd. Metal-Substituted Derivatives of the Rubredoxin From Clostridium Pasteurianum. Acta Crystallogr.,Sect.D V. 60 298 2004.
ISSN: ISSN 0907-4449
PubMed: 14747706
DOI: 10.1107/S090744490302794X
Page generated: Wed Oct 28 09:56:11 2020
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