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Cadmium in PDB 1s24: Rubredoxin Domain II From Pseudomonas Oleovorans

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Rubredoxin Domain II From Pseudomonas Oleovorans (pdb code 1s24). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Rubredoxin Domain II From Pseudomonas Oleovorans, PDB code: 1s24:

Cadmium binding site 1 out of 1 in 1s24

Go back to Cadmium Binding Sites List in 1s24
Cadmium binding site 1 out of 1 in the Rubredoxin Domain II From Pseudomonas Oleovorans


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Rubredoxin Domain II From Pseudomonas Oleovorans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd57

b:0.3
occ:1.00
SG A:CYS10 2.5 0.3 1.0
SG A:CYS40 2.6 0.3 1.0
SG A:CYS7 2.6 0.4 1.0
SG A:CYS43 2.6 0.4 1.0
HB2 A:CYS43 2.8 0.0 1.0
HB3 A:CYS7 3.1 0.0 1.0
HB A:THR9 3.2 0.0 1.0
CB A:CYS43 3.2 0.4 1.0
CB A:CYS7 3.3 0.4 1.0
HB3 A:CYS40 3.4 0.0 1.0
HB3 A:CYS10 3.4 0.0 1.0
CB A:CYS40 3.4 0.3 1.0
HB2 A:CYS40 3.6 0.0 1.0
HB2 A:CYS7 3.6 0.0 1.0
CB A:CYS10 3.6 0.3 1.0
H A:CYS10 3.7 0.0 1.0
H A:CYS43 3.8 0.0 1.0
HB3 A:CYS43 3.9 0.0 1.0
HB3 A:ASP42 4.0 0.0 1.0
HG23 A:THR9 4.0 0.0 1.0
N A:CYS10 4.2 0.3 1.0
HB2 A:HIS12 4.2 0.0 1.0
N A:CYS43 4.2 0.4 1.0
CB A:THR9 4.2 0.5 1.0
HB3 A:HIS12 4.3 0.0 1.0
HB2 A:CYS10 4.4 0.0 1.0
CA A:CYS43 4.4 0.4 1.0
H A:GLY11 4.5 0.0 1.0
HB3 A:ASP49 4.5 0.0 1.0
H A:GLY44 4.6 0.0 1.0
HE2 A:TYR50 4.6 0.0 1.0
CA A:CYS10 4.6 0.3 1.0
H A:HIS12 4.6 0.0 1.0
H A:ASP42 4.7 0.0 1.0
CG2 A:THR9 4.7 0.5 1.0
CA A:CYS7 4.7 0.4 1.0
CB A:HIS12 4.8 0.2 1.0
C A:THR9 4.9 0.5 1.0
O A:CYS7 4.9 0.4 1.0
CA A:CYS40 4.9 0.3 1.0
CB A:ASP42 4.9 0.6 1.0
CE2 A:TYR50 4.9 0.5 1.0
H A:THR9 4.9 0.0 1.0
OH A:TYR50 5.0 0.5 1.0
C A:ASP42 5.0 0.6 1.0
HA A:CYS43 5.0 0.0 1.0

Reference:

A.Perry, W.Tambyrajah, J.G.Grossmann, L.Y.Lian, N.S.Scrutton. Solution Structure of the Two-Iron Rubredoxin of Pseudomonas Oleovorans Determined By uc(Nmr) Spectroscopy and Solution X-Ray Scattering and Interactions with Rubredoxin Reductase. Biochemistry V. 43 3167 2004.
ISSN: ISSN 0006-2960
PubMed: 15023067
DOI: 10.1021/BI035817U
Page generated: Fri Aug 28 12:25:56 2020
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