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Cadmium in PDB 1uvp: Structure of the Complex of Porcine Pancreatic Elastase in Complex with Cadmium Refined at 1.85 A Resolution (Crystal B)

Enzymatic activity of Structure of the Complex of Porcine Pancreatic Elastase in Complex with Cadmium Refined at 1.85 A Resolution (Crystal B)

All present enzymatic activity of Structure of the Complex of Porcine Pancreatic Elastase in Complex with Cadmium Refined at 1.85 A Resolution (Crystal B):
3.4.21.36;

Protein crystallography data

The structure of Structure of the Complex of Porcine Pancreatic Elastase in Complex with Cadmium Refined at 1.85 A Resolution (Crystal B), PDB code: 1uvp was solved by M.S.Weiss, S.Panjikar, C.Mueller-Dieckmann, P.A.Tucker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.750, 57.420, 74.030, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 20.5

Other elements in 1uvp:

The structure of Structure of the Complex of Porcine Pancreatic Elastase in Complex with Cadmium Refined at 1.85 A Resolution (Crystal B) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Structure of the Complex of Porcine Pancreatic Elastase in Complex with Cadmium Refined at 1.85 A Resolution (Crystal B) (pdb code 1uvp). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Structure of the Complex of Porcine Pancreatic Elastase in Complex with Cadmium Refined at 1.85 A Resolution (Crystal B), PDB code: 1uvp:

Cadmium binding site 1 out of 1 in 1uvp

Go back to Cadmium Binding Sites List in 1uvp
Cadmium binding site 1 out of 1 in the Structure of the Complex of Porcine Pancreatic Elastase in Complex with Cadmium Refined at 1.85 A Resolution (Crystal B)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of the Complex of Porcine Pancreatic Elastase in Complex with Cadmium Refined at 1.85 A Resolution (Crystal B) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1240

b:14.4
occ:0.80
 OE2 A:GLU69 2.2 10.3 1.0
O A:HOH2070 2.2 20.2 1.0
OE1 A:GLU59 2.3 12.6 1.0
O A:ASN61 2.3 10.9 1.0
OD2 A:ASP66 2.3 10.2 1.0
O A:GLN64 2.4 12.6 1.0
CD A:GLU59 3.0 11.6 1.0
OE2 A:GLU59 3.2 18.3 1.0
CG A:ASP66 3.3 12.2 1.0
CD A:GLU69 3.3 9.5 1.0
C A:ASN61 3.4 10.5 1.0
C A:GLN64 3.6 13.6 1.0
N A:ASP66 3.7 10.8 1.0
CG A:GLU69 3.8 11.2 1.0
N A:ASN61 3.9 8.3 1.0
CB A:ASP66 4.0 5.0 1.0
CA A:ASN61 4.1 9.6 1.0
OD1 A:ASP66 4.2 10.5 1.0
OE1 A:GLU69 4.3 9.3 1.0
CA A:ASN65 4.3 11.9 1.0
C A:ASN65 4.4 11.6 1.0
N A:GLN64 4.4 14.2 1.0
N A:LEU62 4.4 10.5 1.0
N A:HIS60 4.4 7.9 1.0
N A:ASN65 4.5 12.5 1.0
CG A:GLU59 4.5 6.5 1.0
O A:HOH2082 4.5 35.2 1.0
CA A:ASP66 4.5 10.7 1.0
CB A:ASN61 4.5 13.4 1.0
CA A:LEU62 4.6 11.5 1.0
CA A:GLN64 4.6 14.2 1.0
C A:LEU62 4.7 12.8 1.0
C A:HIS60 4.9 9.0 1.0
CA A:GLU59 5.0 8.6 1.0

Reference:

M.S.Weiss, S.Panjikar, C.Mueller-Dieckmann, P.A.Tucker. On the Influence of the Incident Photon Energy on the Radiation Damage in Crystalline Biological Samples J.Synchrotron Radiat. V. 12 304 2005.
ISSN: ISSN 0909-0495
PubMed: 15840915
DOI: 10.1107/S0909049505003328
Page generated: Fri Jul 19 14:15:51 2024

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