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Cadmium in PDB 1vcf: Crystal Structure of Ipp Isomerase at I422

Enzymatic activity of Crystal Structure of Ipp Isomerase at I422

All present enzymatic activity of Crystal Structure of Ipp Isomerase at I422:
5.3.3.2;

Protein crystallography data

The structure of Crystal Structure of Ipp Isomerase at I422, PDB code: 1vcf was solved by T.Wada, S.-Y.Park, R.H.Tame, S.Kuramitsu, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.94 / 2.60
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 144.427, 144.427, 169.821, 90.00, 90.00, 90.00
R / Rfree (%) 24.2 / 26

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Ipp Isomerase at I422 (pdb code 1vcf). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Ipp Isomerase at I422, PDB code: 1vcf:

Cadmium binding site 1 out of 1 in 1vcf

Go back to Cadmium Binding Sites List in 1vcf
Cadmium binding site 1 out of 1 in the Crystal Structure of Ipp Isomerase at I422


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Ipp Isomerase at I422 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd601

b:64.1
occ:1.00
OD2 A:ASP136 2.3 60.7 1.0
OD1 A:ASP135 2.7 59.7 1.0
CG A:ASP136 2.9 58.5 1.0
OD1 A:ASP136 2.9 59.4 1.0
OD2 A:ASP135 3.4 62.2 1.0
CG A:ASP135 3.4 60.3 1.0
N A:GLY133 4.3 54.8 1.0
CB A:ASP136 4.3 55.9 1.0
NH2 A:ARG139 4.4 65.1 1.0
N A:ASP136 4.5 52.3 1.0
CA A:GLY133 4.7 54.2 1.0
CB A:ASP135 4.9 57.5 1.0
CA A:ASP136 4.9 53.7 1.0

Reference:

T.Wada, S.-Y.Park, R.H.Tame, S.Kuramitsu, S.Yokoyama. Crystal Structure of Ipp Isomerase at I422 To Be Published.
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