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Cadmium in PDB 1vq7: The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
Protein crystallography data
The structure of The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui, PDB code: 1vq7
was solved by
T.M.Schmeing,
T.A.Steitz,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 50.00 / 2.50 |
| Space group | C 2 2 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 211.150, 300.130, 573.290, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 20.7 / 24.5 |
Other elements in 1vq7:
The structure of The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui also contains other interesting chemical elements:
| Magnesium | (Mg) | 118 atoms |
| Potassium | (K) | 3 atoms |
| Chlorine | (Cl) | 22 atoms |
| Sodium | (Na) | 86 atoms |
Cadmium Binding Sites:
The binding sites of Cadmium atom in the The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
(pdb code 1vq7). This binding sites where shown within
5.0 Angstroms radius around Cadmium atom.
In total 5 binding sites of Cadmium where determined in the The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui, PDB code: 1vq7:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
In total 5 binding sites of Cadmium where determined in the The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui, PDB code: 1vq7:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
Cadmium binding site 1 out of 5 in 1vq7
Go back to
Cadmium Binding Sites List in 1vq7
Cadmium binding site 1 out
of 5 in the The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 1 of The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Cadmium binding site 2 out of 5 in 1vq7
Go back to
Cadmium Binding Sites List in 1vq7
Cadmium binding site 2 out
of 5 in the The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 2 of The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Cadmium binding site 3 out of 5 in 1vq7
Go back to
Cadmium Binding Sites List in 1vq7
Cadmium binding site 3 out
of 5 in the The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 3 of The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Cadmium binding site 4 out of 5 in 1vq7
Go back to
Cadmium Binding Sites List in 1vq7
Cadmium binding site 4 out
of 5 in the The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 4 of The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Cadmium binding site 5 out of 5 in 1vq7
Go back to
Cadmium Binding Sites List in 1vq7
Cadmium binding site 5 out
of 5 in the The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 5 of The Structure of the Transition State Analogue "Dca" Bound to the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Reference:
T.M.Schmeing,
K.S.Huang,
S.A.Strobel,
T.A.Steitz.
An Induced-Fit Mechanism to Promote Peptide Bond Formation and Exclude Hydrolysis of Peptidyl-Trna. Nature V. 438 520 2005.
ISSN: ISSN 0028-0836
PubMed: 16306996
DOI: 10.1038/NATURE04152
Page generated: Fri Jul 19 14:19:07 2024
ISSN: ISSN 0028-0836
PubMed: 16306996
DOI: 10.1038/NATURE04152
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