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Cadmium in PDB 1w77: 2C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Arabidopsis Thaliana

Enzymatic activity of 2C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Arabidopsis Thaliana

All present enzymatic activity of 2C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Arabidopsis Thaliana:
2.7.7.60;

Protein crystallography data

The structure of 2C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Arabidopsis Thaliana, PDB code: 1w77 was solved by M.Gabrielsen, J.Kaiser, F.Rohdich, W.Eisenreich, A.Bacher, C.S.Bond, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.95 / 2.00
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 74.496, 74.496, 223.026, 90.00, 90.00, 120.00
R / Rfree (%) 23.2 / 34.9

Other elements in 1w77:

The structure of 2C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Arabidopsis Thaliana also contains other interesting chemical elements:

Copper (Cu) 4 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the 2C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Arabidopsis Thaliana (pdb code 1w77). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the 2C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Arabidopsis Thaliana, PDB code: 1w77:

Cadmium binding site 1 out of 1 in 1w77

Go back to Cadmium Binding Sites List in 1w77
Cadmium binding site 1 out of 1 in the 2C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of 2C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Ispd) From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1000

b:32.7
occ:1.00
 OE2 A:GLU121 1.8 29.6 1.0
OE2 A:GLU191 2.4 24.5 1.0
O A:HOH2025 2.5 27.4 1.0
CD A:GLU121 2.6 43.2 1.0
OE1 A:GLU191 2.6 28.0 1.0
OE1 A:GLU121 2.7 30.4 1.0
CD A:GLU191 2.8 34.4 1.0
O A:HOH2095 4.0 36.7 1.0
CG A:GLU121 4.1 31.6 1.0
CG A:GLU191 4.3 24.8 1.0
CD A:PRO120 4.5 23.8 1.0
O A:HOH2094 4.7 38.1 1.0
O A:HOH2099 4.8 39.7 1.0
CG A:PRO120 5.0 28.7 1.0
CE A:MET119 5.0 32.1 1.0

Reference:

M.Gabrielsen, J.Kaiser, F.Rohdich, W.Eisenreich, R.Laupitz, A.Bacher, C.S.Bond, W.N.Hunter. The Crystal Structure of A Plant 2C-Methyl-D- Erythritol 4-Phosphate Cytidylyltransferase Exhibits A Distinct Quaternary Structure Compared to Bacterial Homologues and A Possible Role in Feedback Regulation For Cytidine Monophosphate. Febs J. V. 273 1065 2006.
ISSN: ISSN 1742-464X
PubMed: 16478479
DOI: 10.1111/J.1742-4658.2006.05133.X
Page generated: Sat Dec 12 08:15:14 2020

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