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Cadmium in PDB 1wje: Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), Minimized Average Structure

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), Minimized Average Structure (pdb code 1wje). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), Minimized Average Structure, PDB code: 1wje:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 1wje

Go back to Cadmium Binding Sites List in 1wje
Cadmium binding site 1 out of 2 in the Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd56

b:0.4
occ:1.00
SG A:CYS40 2.6 0.5 1.0
SG A:CYS12 2.6 0.4 1.0
SG A:CYS43 2.6 0.5 1.0
CB A:CYS40 3.4 0.4 1.0
HB3 A:CYS12 3.4 0.4 1.0
HB2 A:CYS40 3.4 0.4 1.0
HB3 A:CYS40 3.5 0.4 1.0
HB2 A:CYS43 3.6 0.5 1.0
CB A:CYS12 3.6 0.4 1.0
HA A:GLU13 3.7 0.5 1.0
H A:CYS43 3.7 0.5 1.0
CB A:CYS43 3.8 0.5 1.0
C A:CYS12 3.9 0.4 1.0
HB2 A:LYS42 4.0 0.6 1.0
O A:CYS12 4.0 0.4 1.0
HG3 A:GLU13 4.0 1.8 1.0
N A:GLU13 4.1 0.5 1.0
N A:CYS43 4.3 0.5 1.0
CA A:GLU13 4.4 0.5 1.0
CA A:CYS12 4.4 0.4 1.0
H A:GLU13 4.5 0.5 1.0
HB2 A:CYS12 4.5 0.4 1.0
HB3 A:CYS43 4.5 0.5 1.0
CA A:CYS43 4.7 0.5 1.0
HG2 A:GLU13 4.7 1.8 1.0
HA A:HIS16 4.8 0.5 1.0
CG A:GLU13 4.8 1.2 1.0
HA A:VAL37 4.8 0.2 1.0
O A:HIS16 4.9 0.5 1.0
CA A:CYS40 4.9 0.4 1.0
HA A:CYS12 5.0 0.3 1.0
H A:LYS42 5.0 0.6 1.0

Cadmium binding site 2 out of 2 in 1wje

Go back to Cadmium Binding Sites List in 1wje
Cadmium binding site 2 out of 2 in the Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd56

b:0.4
occ:1.00
SG B:CYS40 2.6 0.5 1.0
SG B:CYS12 2.6 0.4 1.0
SG B:CYS43 2.6 0.5 1.0
CB B:CYS40 3.4 0.4 1.0
HB3 B:CYS12 3.4 0.4 1.0
HB2 B:CYS40 3.4 0.4 1.0
HB3 B:CYS40 3.5 0.4 1.0
HB2 B:CYS43 3.6 0.5 1.0
CB B:CYS12 3.6 0.4 1.0
H B:CYS43 3.7 0.5 1.0
HA B:GLU13 3.7 0.5 1.0
CB B:CYS43 3.8 0.5 1.0
C B:CYS12 3.9 0.4 1.0
HB2 B:LYS42 4.0 0.6 1.0
O B:CYS12 4.0 0.4 1.0
HG3 B:GLU13 4.0 1.8 1.0
N B:GLU13 4.1 0.4 1.0
N B:CYS43 4.3 0.5 1.0
CA B:GLU13 4.4 0.5 1.0
CA B:CYS12 4.4 0.3 1.0
H B:GLU13 4.5 0.5 1.0
HB2 B:CYS12 4.5 0.4 1.0
HB3 B:CYS43 4.5 0.6 1.0
CA B:CYS43 4.7 0.5 1.0
HG2 B:GLU13 4.7 1.8 1.0
HA B:HIS16 4.8 0.5 1.0
CG B:GLU13 4.8 1.2 1.0
HA B:VAL37 4.8 0.2 1.0
O B:HIS16 4.9 0.5 1.0
CA B:CYS40 4.9 0.4 1.0
HA B:CYS12 5.0 0.3 1.0
H B:LYS42 5.0 0.6 1.0

Reference:

M.Cai, Y.Huang, M.Caffrey, R.Zheng, R.Craigie, G.M.Clore, A.M.Gronenborn. Solution Structure of the HIS12 --> Cys Mutant of the N-Terminal Zinc Binding Domain of Hiv-1 Integrase Complexed to Cadmium. Protein Sci. V. 7 2669 1998.
ISSN: ISSN 0961-8368
PubMed: 9865962
Page generated: Fri Aug 28 12:37:06 2020
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