Atomistry » Cadmium » PDB 1vqp-1yjw » 1wjf
Atomistry »
  Cadmium »
    PDB 1vqp-1yjw »
      1wjf »

Cadmium in PDB 1wjf: Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), 40 Structures

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), 40 Structures (pdb code 1wjf). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), 40 Structures, PDB code: 1wjf:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 1wjf

Go back to Cadmium Binding Sites List in 1wjf
Cadmium binding site 1 out of 2 in the Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), 40 Structures


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), 40 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd56

b:0.0
occ:1.00
SG A:CYS40 2.6 0.0 1.0
SG A:CYS43 2.6 0.0 1.0
SG A:CYS12 2.6 0.0 1.0
HB3 A:CYS12 3.3 0.0 1.0
CB A:CYS40 3.4 0.0 1.0
HB2 A:CYS40 3.5 0.0 1.0
HB3 A:CYS40 3.5 0.0 1.0
CB A:CYS12 3.6 0.0 1.0
HB2 A:CYS43 3.7 0.0 1.0
H A:CYS43 3.7 0.0 1.0
HB2 A:LYS42 3.8 0.0 1.0
CB A:CYS43 3.9 0.0 1.0
HA A:GLU13 4.0 0.0 1.0
C A:CYS12 4.2 0.0 1.0
O A:CYS12 4.3 0.0 1.0
N A:GLU13 4.3 0.0 1.0
N A:CYS43 4.4 0.0 1.0
HB2 A:CYS12 4.4 0.0 1.0
CA A:CYS12 4.5 0.0 1.0
HB3 A:CYS43 4.6 0.0 1.0
H A:GLU13 4.6 0.0 1.0
CA A:GLU13 4.7 0.0 1.0
CA A:CYS43 4.8 0.0 1.0
HA A:HIS16 4.8 0.0 1.0
CB A:LYS42 4.9 0.0 1.0
CA A:CYS40 4.9 0.0 1.0
HA A:VAL37 4.9 0.0 1.0
H A:LYS42 4.9 0.0 1.0
O A:HIS16 4.9 0.0 1.0
HB2 A:GLU13 4.9 0.0 1.0
HD2 A:LYS42 5.0 0.0 1.0

Cadmium binding site 2 out of 2 in 1wjf

Go back to Cadmium Binding Sites List in 1wjf
Cadmium binding site 2 out of 2 in the Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), 40 Structures


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Solution Structure of H12C Mutant of the N-Terminal Zn Binding Domain of Hiv-1 Integrase Complexed to Cadmium, uc(Nmr), 40 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd56

b:0.0
occ:1.00
SG B:CYS40 2.6 0.0 1.0
SG B:CYS43 2.6 0.0 1.0
SG B:CYS12 2.6 0.0 1.0
HB3 B:CYS12 3.3 0.0 1.0
CB B:CYS40 3.4 0.0 1.0
HB2 B:CYS40 3.5 0.0 1.0
HB3 B:CYS40 3.5 0.0 1.0
CB B:CYS12 3.6 0.0 1.0
HB2 B:CYS43 3.7 0.0 1.0
H B:CYS43 3.7 0.0 1.0
HB2 B:LYS42 3.8 0.0 1.0
CB B:CYS43 3.8 0.0 1.0
HA B:GLU13 4.0 0.0 1.0
C B:CYS12 4.2 0.0 1.0
O B:CYS12 4.3 0.0 1.0
N B:GLU13 4.3 0.0 1.0
N B:CYS43 4.4 0.0 1.0
HB2 B:CYS12 4.4 0.0 1.0
CA B:CYS12 4.5 0.0 1.0
HB3 B:CYS43 4.6 0.0 1.0
H B:GLU13 4.6 0.0 1.0
CA B:GLU13 4.7 0.0 1.0
CA B:CYS43 4.8 0.0 1.0
HA B:HIS16 4.8 0.0 1.0
CB B:LYS42 4.9 0.0 1.0
CA B:CYS40 4.9 0.0 1.0
HA B:VAL37 4.9 0.0 1.0
H B:LYS42 4.9 0.0 1.0
O B:HIS16 4.9 0.0 1.0
HB2 B:GLU13 5.0 0.0 1.0
HD2 B:LYS42 5.0 0.0 1.0

Reference:

M.Cai, Y.Huang, M.Caffrey, R.Zheng, R.Craigie, G.M.Clore, A.M.Gronenborn. Solution Structure of the HIS12 --> Cys Mutant of the N-Terminal Zinc Binding Domain of Hiv-1 Integrase Complexed to Cadmium. Protein Sci. V. 7 2669 1998.
ISSN: ISSN 0961-8368
PubMed: 9865962
Page generated: Fri Jul 19 14:26:55 2024

Last articles

Ca in 3BXM
Ca in 3BXK
Ca in 3BX1
Ca in 3BXI
Ca in 3BVH
Ca in 3BVC
Ca in 3BWX
Ca in 3BSE
Ca in 3BUZ
Ca in 3BTW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy