Atomistry » Cadmium » PDB 1vqp-1yjw » 1wqh
Atomistry »
  Cadmium »
    PDB 1vqp-1yjw »
      1wqh »

Cadmium in PDB 1wqh: Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis

Protein crystallography data

The structure of Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis, PDB code: 1wqh was solved by K.Saikrishnan, S.K.Kalapala, U.Varshney, M.Vijayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.317, 33.794, 62.377, 90.00, 112.54, 90.00
R / Rfree (%) 22 / 28.4

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis (pdb code 1wqh). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis, PDB code: 1wqh:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 1wqh

Go back to Cadmium Binding Sites List in 1wqh
Cadmium binding site 1 out of 2 in the Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1001

b:52.1
occ:1.00
NE2 A:HIS140 2.2 50.0 1.0
OE2 A:GLU157 2.5 46.2 1.0
SD A:MET136 2.7 55.0 1.0
CE1 A:HIS140 3.1 49.1 1.0
CD2 A:HIS140 3.3 50.3 1.0
CD A:GLU157 3.4 48.7 1.0
CG A:MET136 3.4 53.2 1.0
OE1 A:GLU157 4.1 47.9 1.0
CE A:MET136 4.2 52.7 1.0
CG A:GLU157 4.2 49.1 1.0
ND1 A:HIS140 4.3 45.1 1.0
CG A:HIS140 4.4 46.7 1.0
O A:HOH1013 4.4 66.9 1.0
NH2 A:ARG143 4.5 52.4 1.0
CB A:GLU157 4.8 49.3 1.0
CB A:MET136 4.9 52.5 1.0

Cadmium binding site 2 out of 2 in 1wqh

Go back to Cadmium Binding Sites List in 1wqh
Cadmium binding site 2 out of 2 in the Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1002

b:81.6
occ:1.00
NE2 A:HIS177 2.3 49.8 1.0
CE1 A:HIS177 3.1 50.2 1.0
CD2 A:HIS177 3.4 48.9 1.0
OE2 A:GLU173 3.6 51.8 1.0
O A:HOH1027 4.0 71.7 1.0
ND1 A:HIS177 4.3 50.9 1.0
NZ A:LYS176 4.4 55.3 1.0
CG A:HIS177 4.4 48.5 1.0
CD A:GLU173 4.7 50.8 1.0
CG A:GLU173 4.8 47.8 1.0
CE A:LYS176 5.0 53.7 1.0

Reference:

K.Saikrishnan, S.K.Kalapala, U.Varshney, M.Vijayan. X-Ray Structural Studies of Mycobacterium Tuberculosis Rrf and A Comparative Study of Rrfs of Known Structure. Molecular Plasticity and Biological Implications J.Mol.Biol. V. 345 29 2005.
ISSN: ISSN 0022-2836
PubMed: 15567408
DOI: 10.1016/J.JMB.2004.10.034
Page generated: Wed Oct 28 09:57:55 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy