Atomistry » Cadmium » PDB 1vqp-1yjw » 1xau
Atomistry »
  Cadmium »
    PDB 1vqp-1yjw »
      1xau »

Cadmium in PDB 1xau: Structure of the Btla Ectodomain

Protein crystallography data

The structure of Structure of the Btla Ectodomain, PDB code: 1xau was solved by C.A.Nelson, D.H.Fremont, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.85 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.670, 37.542, 90.151, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 26.9

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Structure of the Btla Ectodomain (pdb code 1xau). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Structure of the Btla Ectodomain, PDB code: 1xau:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 1xau

Go back to Cadmium Binding Sites List in 1xau
Cadmium binding site 1 out of 2 in the Structure of the Btla Ectodomain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of the Btla Ectodomain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd122

b:24.9
occ:1.00
O A:HOH251 1.8 32.9 1.0
O A:HOH275 2.2 40.1 1.0
NE2 A:HIS107 2.3 19.6 1.0
O A:HOH240 2.4 30.8 1.0
O A:HOH203 2.6 18.4 1.0
CD2 A:HIS107 3.2 19.8 1.0
O A:HOH317 3.3 47.9 1.0
CE1 A:HIS107 3.3 20.0 1.0
O A:HOH398 4.3 63.1 1.0
CG A:HIS107 4.4 17.7 1.0
O A:HOH382 4.4 60.2 1.0
ND1 A:HIS107 4.4 19.4 1.0
O A:HOH329 4.4 49.9 1.0
O A:HOH276 4.9 40.1 1.0

Cadmium binding site 2 out of 2 in 1xau

Go back to Cadmium Binding Sites List in 1xau
Cadmium binding site 2 out of 2 in the Structure of the Btla Ectodomain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Structure of the Btla Ectodomain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd123

b:21.4
occ:1.00
O A:HOH208 2.2 21.4 1.0
O A:HOH211 2.2 23.3 1.0
ND1 A:HIS23 2.3 20.4 1.0
O A:HOH214 2.3 24.8 1.0
O A:HOH227 2.3 28.0 1.0
CE1 A:HIS23 3.2 21.0 1.0
CG A:HIS23 3.3 18.7 1.0
CB A:HIS23 3.6 18.5 1.0
O A:HOH262 3.8 35.2 1.0
CA A:HIS23 4.0 18.8 1.0
N A:SER24 4.3 18.3 1.0
O A:HOH237 4.3 30.4 1.0
NE2 A:HIS23 4.3 20.6 1.0
CD2 A:HIS23 4.4 19.4 1.0
O A:HOH281 4.4 40.3 1.0
O A:HOH279 4.5 40.2 1.0
O A:SER24 4.6 19.7 1.0
C A:HIS23 4.7 18.9 1.0
O A:LYS22 4.8 19.0 1.0

Reference:

C.A.Nelson, M.D.Fremont, J.R.Sedy, P.S.Norris, C.F.Ware, K.M.Murphy, D.H.Fremont. Structural Determinants of Herpesvirus Entry Mediator Recognition By Murine B and T Lymphocyte Attenuator. J.Immunol. V. 180 940 2008.
ISSN: ISSN 0022-1767
PubMed: 18178834
Page generated: Thu Jul 10 11:32:34 2025

Last articles

Cl in 4A33
Cl in 4A46
Cl in 4A25
Cl in 4A30
Cl in 4A32
Cl in 4A2Z
Cl in 4A1T
Cl in 4A26
Cl in 4A1Y
Cl in 4A1I
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy