Chemical elements
  Cadmium
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    Chemical Properties
    PDB 1a4k-1exq
    PDB 1f48-1ihu
    PDB 1ii0-1mhu
    PDB 1mms-1qvg
    PDB 1qy0-1wb6
    PDB 1wje-2avp
      1wje
      1wjf
      1wqf
      1wqg
      1wqh
      1wvr
      1x3e
      1x3f
      1x3g
      1xau
      1xmk
      1xwa
      1xwb
      1xz1
      1xz3
      1xzo
      1y1l
      1y47
      1y66
      1y7m
      1yhq
      1yi2
      1yij
      1yit
      1yiw
      1yj1
      1yj9
      1yjn
      1yjw
      1ykq
      1ynt
      1yp6
      1yp7
      1z16
      1z18
      1z98
      1zha
      1zji
      1znd
      1zne
      1zng
      1znh
      1znk
      1znl
      1zps
      1zww
      2a38
      2a8a
      2a97
      2avp
    PDB 2b3p-2j6e
    PDB 2jdz-2x05
    PDB 2x09-3ccj
    PDB 3ccl-3ggf
    PDB 3h1u-3p5v
    PDB 3p5w-8ice

Cadmium in the structure of The Crystal Structure of The Zb Domain From the Rna Editing Enzyme ADAR1 (pdb 1xmk)






The binding sites of Cadmium atom in the structure of The Crystal Structure of The Zb Domain From the Rna Editing Enzyme ADAR1 (pdb code 1xmk). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom.
The 1xmk structure was solved by A.ATHANASIADIS, D.PLACIDO, S.MAAS, B.A.BROWN II, K.LOWENHAUPT, A.RICH, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)10.0-1.0
Space groupP212121
a (A)35.557
b (A)43.526
c (A)45.471
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)14.5
Rfree (%)18.3


Cadmium Binding Sites:

Cadmium binding site 1 out of 2 in 1xmk


Cadmium binding site 1 out of 2 in 1xmk
Click to enlarge
stereopicture of Cadmium binding site 1 out of 2 in 1xmk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 1xmk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu301, A: Cys304, A: Lys359, A: Met363, A: Cd397, A: Cl399, A: Hoh1023, A: Hoh1073,

conact list:


AtomAtomDistance (A)
CdOE2 A:Glu3013.96
CdCB A:Cys3043.33
CdSG A:Cys3042.51
CdCA A:Cys3044.68
CdCE A:Lys3593.05
CdCD A:Lys3594.49
CdNZ A:Lys3592.21
CdCE A:Met3634.31
CdSD A:Met3634.60
CdCD A:Cd3973.66
CdCL A:Cl3992.45
CdO A:Hoh10233.93
CdO A:Hoh10734.30

interactive model:


Cadmium binding site 2 out of 2 in 1xmk


Cadmium binding site 2 out of 2 in 1xmk
Click to enlarge
stereopicture of Cadmium binding site 2 out of 2 in 1xmk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cadmium in the PDB 1xmk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu301, A: Cys304, A: Asp305, A: Met363, A: Cd396, A: Cl400, A: Hoh1023,

conact list:


AtomAtomDistance (A)
CdO A:Glu3014.89
CdOE1 A:Glu3012.29
CdOE2 A:Glu3012.54
CdCD A:Glu3012.79
CdCG A:Glu3014.30
CdCB A:Cys3043.66
CdSG A:Cys3042.61
CdC A:Cys3044.63
CdCA A:Cys3044.81
CdN A:Asp3054.51
CdN A:Asp3054.51
CdCA A:Asp3054.98
CdCA A:Asp3054.98
CdCE A:Met3634.29
CdCD A:Cd3963.66
CdCL A:Cl4002.55
CdO A:Hoh10234.81

interactive model:




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