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Cadmium in PDB 1xzo: Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins

Protein crystallography data

The structure of Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins, PDB code: 1xzo was solved by Q.Ye, I.Imriskova-Sosova, B.C.Hill, Z.Jia, Montreal-Kingston Bacterialstructural Genomics Initiative (Bsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.20 / 1.70
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 68.033, 68.033, 191.733, 90.00, 90.00, 120.00
R / Rfree (%) 23.8 / 28.9

Other elements in 1xzo:

The structure of Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins also contains other interesting chemical elements:

Calcium (Ca) 14 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins (pdb code 1xzo). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 5 binding sites of Cadmium where determined in the Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins, PDB code: 1xzo:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;

Cadmium binding site 1 out of 5 in 1xzo

Go back to Cadmium Binding Sites List in 1xzo
Cadmium binding site 1 out of 5 in the Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1001

b:29.1
occ:1.00
O A:HOH1186 1.2 16.3 1.0
NE2 A:HIS55 2.2 15.8 1.0
CA A:CA1015 2.3 34.0 1.0
O A:HOH1035 2.5 27.1 1.0
CD2 A:HIS55 3.1 24.5 1.0
CE1 A:HIS55 3.2 28.9 1.0
O A:HOH1111 3.6 39.7 1.0
O A:HOH1064 4.0 35.0 1.0
O A:HOH1113 4.3 43.5 1.0
ND1 A:HIS55 4.3 21.3 1.0
CG A:HIS55 4.3 19.8 1.0
O A:HOH1058 4.7 38.0 1.0
OH A:TYR160 4.9 23.5 1.0

Cadmium binding site 2 out of 5 in 1xzo

Go back to Cadmium Binding Sites List in 1xzo
Cadmium binding site 2 out of 5 in the Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1002

b:36.3
occ:1.00
O B:HOH1208 1.3 16.7 1.0
O B:HOH1215 1.8 31.0 1.0
OE2 B:GLU114 2.3 33.0 1.0
OE1 B:GLU114 2.4 36.7 1.0
OE1 A:GLU14 2.4 40.9 1.0
OE2 A:GLU14 2.5 30.5 1.0
CD B:GLU114 2.7 28.7 1.0
CD A:GLU14 2.7 27.4 1.0
CG B:GLU114 4.2 25.1 1.0
CG A:GLU14 4.3 25.0 1.0
O B:HOH1190 4.6 52.8 1.0
O A:HOH1071 4.6 38.6 1.0
CD A:PRO15 4.7 23.4 1.0
O A:HOH1083 4.8 42.4 1.0
CB A:GLU14 4.9 19.5 1.0

Cadmium binding site 3 out of 5 in 1xzo

Go back to Cadmium Binding Sites List in 1xzo
Cadmium binding site 3 out of 5 in the Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1003

b:41.9
occ:1.00
OE1 A:GLU113 2.2 24.5 1.0
NZ A:LYS125 2.4 44.7 1.0
O A:HOH1029 2.4 25.2 1.0
OE2 A:GLU113 2.4 29.5 1.0
CD A:GLU113 2.6 26.8 1.0
CD A:LYS125 2.8 39.2 1.0
CE A:LYS125 2.8 33.1 1.0
O A:HOH1195 4.0 52.0 1.0
CG A:GLU113 4.1 22.6 1.0
CG A:LYS125 4.3 35.9 1.0
CG A:GLN109 4.4 24.2 1.0
O A:VAL124 4.6 28.9 1.0
CA A:LYS125 4.6 30.7 1.0
CB A:LYS125 4.7 33.3 1.0
OE1 A:GLN109 4.8 26.8 1.0
N A:LYS126 4.9 34.6 1.0

Cadmium binding site 4 out of 5 in 1xzo

Go back to Cadmium Binding Sites List in 1xzo
Cadmium binding site 4 out of 5 in the Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1004

b:48.7
occ:1.00
OD1 A:ASP166 2.4 25.1 1.0
OD1 A:ASP162 2.5 33.6 1.0
O A:HOH1183 2.6 41.7 1.0
OD2 A:ASP166 2.6 28.6 1.0
NZ A:LYS6 2.6 35.5 1.0
CE A:LYS6 2.7 44.9 1.0
CG A:ASP166 2.8 28.5 1.0
OD2 A:ASP162 2.9 42.9 1.0
CG A:ASP162 3.1 32.4 1.0
CD A:LYS6 3.9 48.7 1.0
O A:ASP162 4.3 26.9 1.0
O A:HOH1150 4.3 56.0 1.0
CB A:ASP166 4.4 25.9 1.0
CB A:ASP162 4.5 27.4 1.0
O A:HOH1090 4.5 37.2 1.0
NZ A:LYS150 4.8 46.0 1.0
C A:ASP162 4.8 25.4 1.0
CG A:LYS6 4.9 51.4 1.0
CD A:LYS150 4.9 41.2 1.0
CA A:ASP162 4.9 26.5 1.0

Cadmium binding site 5 out of 5 in 1xzo

Go back to Cadmium Binding Sites List in 1xzo
Cadmium binding site 5 out of 5 in the Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd1000

b:29.2
occ:1.00
O B:HOH1203 1.1 10.5 1.0
NE2 B:HIS55 2.2 13.8 1.0
CA B:CA1011 2.3 34.0 1.0
O B:HOH1036 2.7 28.4 1.0
CD2 B:HIS55 3.1 22.8 1.0
CE1 B:HIS55 3.2 31.1 1.0
O B:HOH1066 3.8 36.7 1.0
ND1 B:HIS55 4.2 27.0 1.0
CG B:HIS55 4.2 22.6 1.0
O B:HOH1051 4.6 34.1 1.0
O B:HOH1089 4.7 33.9 1.0
OH B:TYR160 4.8 26.8 1.0

Reference:

Q.Ye, I.Imriskova-Sosova, B.C.Hill, Z.Jia. Identification of A Disulfide Switch in Bssco, A Member of the Sco Family of Cytochrome C Oxidase Assembly Proteins Biochemistry V. 44 2934 2005.
ISSN: ISSN 0006-2960
PubMed: 15723536
DOI: 10.1021/BI0480537
Page generated: Fri Jul 19 14:31:46 2024

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